Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

18651324 .. 18652641

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCAGCAAAAAGAGTTGATGCAGTAGCTCTATTTGTAATTATTTTTTTATTATTTAAAATTAGGATTTGTTTCGCAGAAAGCCAGGAGTCTGGACAATTTCACCCAGTCGCTCACTCACTCTCTCTCGACCTCACCTCACTTCACCGCTCACCTTGCTCTCTCATCCAGTCATCCTTGCTCAACATTGACGCCCATCTCGATCGATTCTCCGAAGCCAAAGTCGTCGAGGACGTTCGAGTGTTGGCCCATAGGATCGACGGCCGCCAAGAAGGGTGTCCTGGCTTGACCGAAGCTGCTCGGTACATTACGGGGCAGTTGGAAATGATGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

113

Amino Acids

12.51

Weight (kDa)

6.19

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	2 cut(s)	148, 265
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	84, 280
AluBI	AGCT	2 cut(s)	29, 296
AluI	AGCT	2 cut(s)	29, 296
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	246, 262
ApeKI	GCWGC	2 cut(s)	5, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	95, 127, 137, 144
BbvI	GCAGC	2 cut(s)	17, 283
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	86, 282
BisI	GCNGC	3 cut(s)	6, 265, 297
BlsI	GCNGC	3 cut(s)	7, 266, 298
Bme1390I	CCNGG	2 cut(s)	86, 282
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	86, 282
BmrI	ACTGGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	107, 169
BseBI	CCWGG	2 cut(s)	86, 282
BseCI	ATCGAT	1 cut(s)	205
BseGI	GGATG	2 cut(s)	165, 173
BseNI	ACTGG	2 cut(s)	107, 169
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	17, 283
Bsh1285I	CGRYCG	2 cut(s)	205, 265
BshFI	GGCC	2 cut(s)	248, 264
BshVI	ATCGAT	1 cut(s)	205
BsiEI	CGRYCG	2 cut(s)	205, 265
BsnI	GGCC	2 cut(s)	248, 264
Bsp143I	GATC	2 cut(s)	202, 255
BspACI	CCGC	2 cut(s)	148, 265
BspANI	GGCC	2 cut(s)	248, 264
BspDI	ATCGAT	1 cut(s)	205
BspPI	GGATC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	107, 169
BssMI	GATC	2 cut(s)	202, 255
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	86, 282
BstACI	GRCGYC	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	165, 173
BstKTI	GATC	2 cut(s)	205, 258
BstMBI	GATC	2 cut(s)	202, 255
BstMCI	CGRYCG	2 cut(s)	205, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	86, 282
BstSCI	CCNGG	2 cut(s)	84, 280
BstV1I	GCAGC	2 cut(s)	17, 283
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstZI	CGGCCG	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	248, 264
BsuTUI	ATCGAT	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	165, 173
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	205
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	7 cut(s)	29, 84, 218, 248, 264, 285, 296
CviKI_1	RGCY	7 cut(s)	29, 84, 218, 248, 264, 285, 296
CviQI	GTAC	1 cut(s)	304
DpnI	GATC	2 cut(s)	204, 257
DpnII	GATC	2 cut(s)	202, 255
DraI	TTTAAA	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	262
EagI	CGGCCG	1 cut(s)	262
EclXI	CGGCCG	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	84, 280
FaiI	YATR	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	6, 265, 297
FokI	GGATG	2 cut(s)	152, 160
Fsp4HI	GCNGC	3 cut(s)	6, 265, 297
GluI	GCNGC	3 cut(s)	6, 265, 297
HaeIII	GGCC	2 cut(s)	248, 264
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	89, 207
HphI	GGTGA	4 cut(s)	95, 127, 137, 144
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	93, 128, 200
Hpy99I	CGWCG	2 cut(s)	230, 263
HpyAV	CCTTC	2 cut(s)	266, 325
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	202, 255
LpnPI	CCDG	7 cut(s)	71, 78, 98, 120, 182, 267, 294
Lsp1109I	GCAGC	2 cut(s)	17, 283
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	234
MalI	GATC	2 cut(s)	204, 257
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	202, 255
MluCI	AATT	3 cut(s)	39, 60, 98
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	143, 148, 223
MseI	TTAA	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	86, 282
MvaI	CCWGG	2 cut(s)	86, 282
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	2 cut(s)	202, 255
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 231
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	7, 266, 298
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	84, 280
PspGI	CCWGG	2 cut(s)	84, 280
PspPI	GGNCC	1 cut(s)	247
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	6, 265, 297
Sau3AI	GATC	2 cut(s)	202, 255
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	86, 282
SetI	ASST	6 cut(s)	31, 135, 140, 157, 237, 298
SfaNI	GCATC	1 cut(s)	10
Sse9I	AATT	3 cut(s)	39, 60, 98
SsiI	CCGC	2 cut(s)	148, 265
StyD4I	CCNGG	2 cut(s)	84, 280
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	6 cut(s)	129, 201, 205, 228, 238, 258
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	39, 60, 98
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	2 cut(s)	5, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.