Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427689.1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1360

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 559 bp

gactacaaaaagaccagtcccattggagcactgcctattttactccggagaactttacaagatatgtgaaagtgaaagcttcattcctcagggcttcaaagctgcaaaagatacattcaagaaaaagaatagtcctgccaccggcggcggcggcggtggatcacgtgctccagcttctgcttcagcttctcacgatggggctcgaggtcaaaaacgtgaaacttcacattcaggaaaacagaagcaattgggtgcccataactcagggaatttatccagaactggtggagcaaatcaaaacaacggcaatggcatgaacaattggggtttaagaagatcagatgcttcttcgtggttgtcacttattaacaaactctcaaagaagtcactattacctgtggttatattttgtttctcaaagaatcgctgtgataggtcagctgatagcatgtcgggaattgacctcacaagtagttctgagaaaagtcagattcgtgttttctgtgacaaagcattttcaaggctgaagggatccgacaggaatttacctcaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

185

Amino Acids

19.89

Weight (kDa)

9.99

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	4 cut(s)	145, 148, 151, 154
AclWI	GGATC	3 cut(s)	167, 526, 539
AcsI	RAATTY	2 cut(s)	269, 542
AcuI	CTGAAG	2 cut(s)	166, 546
AcvI	CACGTG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	98, 119, 520
AluBI	AGCT	5 cut(s)	79, 102, 174, 186, 441
AluI	AGCT	5 cut(s)	79, 102, 174, 186, 441
Alw21I	GWGCWC	2 cut(s)	31, 170
AlwI	GGATC	3 cut(s)	167, 526, 539
AlwNI	CAGNNNCTG	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	269, 542
AvaI	CYCGRG	1 cut(s)	202
AxyI	CCTNAGG	2 cut(s)	88, 550
BaeGI	GKGCMC	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	31, 170
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	103, 146, 149, 152
BlsI	GCNGC	4 cut(s)	104, 147, 150, 153
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	254, 533
BmsI	GCATC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	15, 287
Bse21I	CCTNAGG	2 cut(s)	88, 550
Bse3DI	GCAATG	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	102, 277, 469
BseNI	ACTGG	2 cut(s)	15, 287
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	31, 170
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	46, 142
BslFI	GGGAC	1 cut(s)	3
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	3
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	4 cut(s)	31, 170, 203, 257
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	159, 336, 531
BspACI	CCGC	4 cut(s)	145, 148, 151, 154
BspCNI	CTCAG	3 cut(s)	101, 276, 470
BspEI	TCCGGA	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	254, 533
BspPI	GGATC	3 cut(s)	167, 526, 539
BspT107I	GGYRCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	15, 287
BssAI	RCCGGY	1 cut(s)	141
BssMI	GATC	3 cut(s)	159, 336, 531
BstBAI	YACGTR	1 cut(s)	165
BstDEI	CTNAG	4 cut(s)	88, 263, 478, 550
BstKTI	GATC	3 cut(s)	162, 339, 534
BstMBI	GATC	3 cut(s)	159, 336, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
Bsu36I	CCTNAGG	2 cut(s)	88, 550
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	141
CviAII	CATG	2 cut(s)	314, 449
CviJI	RGCY	8 cut(s)	79, 94, 102, 174, 186, 201, 441, 524
CviKI_1	RGCY	8 cut(s)	79, 94, 102, 174, 186, 201, 441, 524
DdeI	CTNAG	4 cut(s)	88, 263, 478, 550
DpnI	GATC	3 cut(s)	161, 338, 533
DpnII	GATC	3 cut(s)	159, 336, 531
Eco24I	GRGCYC	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	166, 546
Eco72I	CACGTG	1 cut(s)	165
Eco81I	CCTNAGG	2 cut(s)	88, 550
Eco88I	CYCGRG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	2 cut(s)	317, 452
FaiI	YATR	6 cut(s)	65, 259, 315, 405, 450, 557
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	2 cut(s)	313, 448
Fnu4HI	GCNGC	4 cut(s)	103, 146, 149, 152
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	103, 146, 149, 152
GluI	GCNGC	4 cut(s)	103, 146, 149, 152
GsuI	CTGGAG	1 cut(s)	154
HapII	CCGG	2 cut(s)	46, 142
Hin1II	CATG	2 cut(s)	317, 452
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	2 cut(s)	422, 491
HpaII	CCGG	2 cut(s)	46, 142
Hpy188I	TCNGA	4 cut(s)	341, 479, 490, 536
Hpy188III	TCNNGA	6 cut(s)	46, 119, 192, 232, 277, 454
HpyAV	CCTTC	1 cut(s)	521
HpyCH4IV	ACGT	2 cut(s)	164, 215
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	4 cut(s)	88, 263, 478, 550
HpySE526I	ACGT	2 cut(s)	164, 215
Hsp92II	CATG	2 cut(s)	317, 452
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	159, 336, 531
LmnI	GCTCC	3 cut(s)	26, 173, 288
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	332
MaeII	ACGT	2 cut(s)	164, 215
MaeIII	GTNAC	3 cut(s)	358, 385, 504
MalI	GATC	3 cut(s)	161, 338, 533
MboI	GATC	3 cut(s)	159, 336, 531
MboII	GAAGA	2 cut(s)	340, 346
MfeI	CAATTG	2 cut(s)	246, 320
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	4 cut(s)	31, 170, 203, 257
MluCI	AATT	5 cut(s)	246, 269, 320, 457, 542
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	4 cut(s)	97, 198, 474, 559
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	2 cut(s)	330, 367
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	2 cut(s)	46, 142
MunI	CAATTG	2 cut(s)	246, 320
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	3 cut(s)	159, 336, 531
NlaIII	CATG	2 cut(s)	317, 452
NlaIV	GGNNCC	2 cut(s)	254, 533
NmuCI	GTSAC	3 cut(s)	358, 385, 504
NspI	RCATGY	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	422, 491
PkrI	GCNGC	4 cut(s)	104, 147, 150, 153
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	254, 533
PspXI	VCTCGAGB	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	330, 367
SatI	GCNGC	4 cut(s)	103, 146, 149, 152
Sau3AI	GATC	3 cut(s)	159, 336, 531
SduI	GDGCHC	4 cut(s)	31, 170, 203, 257
SfaNI	GCATC	1 cut(s)	332
Sfr274I	CTCGAG	1 cut(s)	202
SgrAI	CRCCGGYG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	5 cut(s)	246, 269, 320, 457, 542
SsiI	CCGC	4 cut(s)	145, 148, 151, 154
TaiI	ACGT	2 cut(s)	167, 218
TaqI	TCGA	1 cut(s)	203
TasI	AATT	5 cut(s)	246, 269, 320, 457, 542
TauI	GCSGC	3 cut(s)	148, 151, 154
TfiI	GAWTC	2 cut(s)	422, 491
Tru1I	TTAA	2 cut(s)	330, 367
Tru9I	TTAA	2 cut(s)	330, 367
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	3 cut(s)	358, 385, 504
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	3 cut(s)	358, 385, 504
TspDTI	ATGAA	2 cut(s)	71, 330
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	269, 542
XceI	RCATGY	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.