Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

20445096 .. 20449139

Gene Structure 4044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGCCGAGGCTCGGCTCCGGCGACGCATCCAGCTTCAAGTTCCTTCTCTTTCTGGTCGAGAATTACCACCTCATCGCCGTGCTTGTCCACTTTGGTGAGAGAAATGAATGGCGGTGGAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGCGCCACTCGACTGGATGATTTCTCAAGTTTCTGGAGAACAGACCGCCGACGAGGAAGTTCAGGAAGGATACCCAATAGGAGCTATGATGACACGACAGCAAGCATGGAAATGAAGCCGAACCTGATGGTTATCGGATGCTTCACAGTCAGAGCAAGGCACATAAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.69

Weight (kDa)

9.98

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	2 cut(s)	4, 161
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	115, 132, 153, 205
AcyI	GRCGYC	3 cut(s)	5, 144, 162
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	40
AleI	CACNNNNGTG	2 cut(s)	96, 324
AluBI	AGCT	2 cut(s)	36, 243
AluI	AGCT	2 cut(s)	36, 243
AspLEI	GCGC	2 cut(s)	7, 164
AsuHPI	GGTGA	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	4, 161
BanII	GRGCYC	1 cut(s)	130
BccI	CCATC	2 cut(s)	152, 280
BceAI	ACGGC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	331
BfoI	RGCGCY	2 cut(s)	8, 165
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	133, 154
BlsI	GCNGC	2 cut(s)	134, 155
BmiI	GGNNCC	3 cut(s)	6, 19, 163
BmsI	GCATC	2 cut(s)	38, 287
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	2 cut(s)	169, 214
BpuEI	CTTGAG	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	290
BsaHI	GRCGYC	3 cut(s)	5, 144, 162
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	3 cut(s)	29, 181, 302
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	132
BshNI	GGYRCC	2 cut(s)	4, 161
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	115, 132, 153, 205
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	6, 19, 163
BspT107I	GGYRCC	2 cut(s)	4, 161
BsrBI	CCGCTC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	8
BssNI	GRCGYC	3 cut(s)	5, 144, 162
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	3 cut(s)	5, 144, 162
BstC8I	GCNNGC	2 cut(s)	130, 262
BstF5I	GGATG	3 cut(s)	29, 181, 302
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	2 cut(s)	8, 165
BstHHI	GCGC	2 cut(s)	7, 164
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 159
BstUI	CGCG	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	222
BtgZI	GCGATG	2 cut(s)	61, 171
BtsCI	GGATG	3 cut(s)	29, 181, 302
Cac8I	GCNNGC	2 cut(s)	130, 262
CfoI	GCGC	2 cut(s)	7, 164
CseI	GACGC	1 cut(s)	35
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	13, 18, 36, 128, 135, 243, 277
CviKI_1	RGCY	7 cut(s)	13, 18, 36, 128, 135, 243, 277
DinI	GGCGCC	2 cut(s)	6, 163
Eco24I	GRGCYC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	130
EgeI	GGCGCC	2 cut(s)	6, 163
EheI	GGCGCC	2 cut(s)	6, 163
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	246, 266, 323
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	133, 154
FokI	GGATG	3 cut(s)	16, 188, 309
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	133, 154
FspBI	CTAG	1 cut(s)	331
GlaI	GCGC	2 cut(s)	6, 163
GluI	GCNGC	2 cut(s)	133, 154
GsuI	CTGGAG	2 cut(s)	169, 214
HaeII	RGCGCY	2 cut(s)	8, 165
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	7, 164
Hin1I	GRCGYC	3 cut(s)	5, 144, 162
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	2 cut(s)	5, 162
HinP1I	GCGC	2 cut(s)	5, 162
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	296, 311
Hpy188III	TCNNGA	4 cut(s)	61, 148, 193, 222
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	3 cut(s)	29, 146, 213
HpyAV	CCTTC	3 cut(s)	56, 117, 219
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 159
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	3 cut(s)	5, 144, 162
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	2 cut(s)	5, 162
KasI	GGCGCC	2 cut(s)	4, 161
LmnI	GCTCC	3 cut(s)	23, 150, 240
LpnPI	CCDG	8 cut(s)	34, 41, 46, 133, 158, 178, 207, 296
LweI	GCATC	2 cut(s)	38, 287
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	326
MbiI	CCGCTC	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	1 cut(s)	64
Mly113I	GGCGCC	2 cut(s)	5, 162
MnlI	CCTC	3 cut(s)	3, 83, 206
MslI	CAYNNNNRTG	4 cut(s)	80, 96, 269, 324
MspI	CCGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	138, 159
NarI	GGCGCC	2 cut(s)	5, 162
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	6, 19, 163
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	326
OliI	CACNNNNGTG	2 cut(s)	96, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	134, 155
PluTI	GGCGCC	2 cut(s)	8, 165
PspN4I	GGNNCC	3 cut(s)	6, 19, 163
RseI	CAYNNNNRTG	4 cut(s)	80, 96, 269, 324
SatI	GCNGC	2 cut(s)	133, 154
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	5 cut(s)	38, 75, 147, 245, 285
SfaNI	GCATC	2 cut(s)	38, 287
SfoI	GGCGCC	2 cut(s)	6, 163
SmiMI	CAYNNNNRTG	4 cut(s)	80, 96, 269, 324
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	115, 132, 153, 205
SspDI	GGCGCC	2 cut(s)	4, 161
SspMI	CTAG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	60, 169
TasI	AATT	1 cut(s)	64
TauI	GCSGC	2 cut(s)	135, 156
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	123, 287
XspI	CTAG	1 cut(s)	331
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.