Rh6BG074100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002552
Physical Location & Seq
Forward (+)
11237676 .. 11237891
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG074100.1

Sequence Viewer

Length: 216 bp
ATGTTGGAGCGTCTCGAGGATCTGAAAACCCAAACTCAAGCTTGGATCTTCATCTCCAACCTCCATAGGCGTCGGCGACTCACAGGTGGTCTGACCGGAATGCCGAGCAACGATGACGGGGAAGGCGAAGCTGAAGAAGCATGTGGCGATGGAGATCCAGGTGAAGATCGACGCGTCTACAACAAATCGCCGAAGCGGGAAGGCCGGAATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.09

Weight (kDa)

5.8

Isoelectric Point (pI)

73.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 196
AclWI GGATC 3 cut(s) 27, 53, 149
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 172
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 41, 131
AluI AGCT 2 cut(s) 41, 131
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 27, 53, 149
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 14
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 21
BsaBI GATNNNNATC 2 cut(s) 50, 153
BsaHI GRCGYC 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 95
Bse8I GATNNNNATC 2 cut(s) 50, 153
BseBI CCWGG 1 cut(s) 159
BseJI GATNNNNATC 2 cut(s) 50, 153
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 96, 205
BsmAI GTCTC 1 cut(s) 17
BsmBI CGTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 4 cut(s) 19, 45, 154, 166
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 204
BspFNI CGCG 1 cut(s) 174
BspPI GGATC 3 cut(s) 27, 53, 149
BssMI GATC 4 cut(s) 19, 45, 154, 166
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 70
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 4 cut(s) 22, 48, 157, 169
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 19, 45, 154, 166
BstMWI GCNNNNNNNGC 2 cut(s) 137, 210
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 174
BstX2I RGATCY 3 cut(s) 19, 45, 154
BstYI RGATCY 3 cut(s) 19, 45, 154
BsuRI GGCC 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 162
CseI GACGC 3 cut(s) 59, 163, 180
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 41, 131, 204
CviKI_1 RGCY 3 cut(s) 41, 131, 204
DpnI GATC 4 cut(s) 21, 47, 156, 168
DpnII GATC 4 cut(s) 19, 45, 154, 166
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 144
FaiI YATR 2 cut(s) 66, 142
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 96, 205
HgaI GACGC 3 cut(s) 59, 163, 180
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 78, 208
HpaII CCGG 2 cut(s) 96, 205
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 24, 93
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 2 cut(s) 75, 174
HpyAV CCTTC 2 cut(s) 116, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 210
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 4 cut(s) 19, 45, 154, 166
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 69, 109, 144, 171
MalI GATC 4 cut(s) 21, 47, 156, 168
MboI GATC 4 cut(s) 19, 45, 154, 166
MboII GAAGA 3 cut(s) 40, 146, 176
MflI RGATCY 3 cut(s) 19, 45, 154
MluI ACGCGT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 10, 71
MspI CCGG 2 cut(s) 96, 205
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 137, 210
NdeII GATC 4 cut(s) 19, 45, 154, 166
NlaIII CATG 1 cut(s) 144
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 208
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PsuI RGATCY 3 cut(s) 19, 45, 154
Sau3AI GATC 4 cut(s) 19, 45, 154, 166
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 159
SetI ASST 5 cut(s) 43, 63, 88, 133, 163
Sfr274I CTCGAG 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 14, 36
SmoI CTYRAG 2 cut(s) 14, 36
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 157
TaqI TCGA 2 cut(s) 15, 169
TfiI GAWTC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 40
XceI RCATGY 1 cut(s) 144
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.