Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

33833333 .. 33833641

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCATGATAGATTTCTGATTCATGTTTTTCACAATTCGGTAAATTTTTTCGCGATTATAAGTAGTGGTGAGAGAAATGAATGGCGGTGGAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGCGCCACTCGACTGGATGTTTCTCAAGTTTCTGGAGAACAGACCGCCGGCGAGGAAGTTCAGGAAGGTACTCTTCTCGATTCTTTCCTTTCGTTTTCGGTTGAATTAGGGATTTTACTGTTAGTTGTCATTCTCATTCTCATTAATACTCATTCCGATTTTCACTTATTGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.56

Weight (kDa)

4.86

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AatII	GACGTC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	53, 102
AciI	CCGC	4 cut(s)	85, 102, 123, 174
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	2 cut(s)	114, 132
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	43
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	100
BccI	CCATC	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	2 cut(s)	103, 124
BlsI	GCNGC	2 cut(s)	104, 125
BmiI	GGNNCC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	2 cut(s)	139, 183
BpuEI	CTTGAG	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	114, 132
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	151, 307
BseNI	ACTGG	1 cut(s)	147
Bsh1236I	CGCG	2 cut(s)	53, 102
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	4 cut(s)	85, 102, 123, 174
BspFNI	CGCG	2 cut(s)	53, 102
BspLI	GGNNCC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	176
BssNI	GRCGYC	2 cut(s)	114, 132
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	114, 132
BstC8I	GCNNGC	2 cut(s)	100, 178
BstF5I	GGATG	2 cut(s)	151, 307
BstFNI	CGCG	2 cut(s)	53, 102
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 129
BstUI	CGCG	2 cut(s)	53, 102
BstXI	CCANNNNNNTGG	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	151, 307
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	100, 178
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	2 cut(s)	5, 23
CviJI	RGCY	2 cut(s)	98, 105
CviKI_1	RGCY	2 cut(s)	98, 105
CviQI	GTAC	1 cut(s)	198
DinI	GGCGCC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	100
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	2 cut(s)	8, 26
FaiI	YATR	3 cut(s)	6, 24, 59
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	2 cut(s)	4, 22
Fnu4HI	GCNGC	2 cut(s)	103, 124
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	103, 124
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	103, 124
GsuI	CTGGAG	2 cut(s)	139, 183
HaeII	RGCGCY	1 cut(s)	135
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	2 cut(s)	114, 132
Hin1II	CATG	2 cut(s)	8, 26
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	19, 209
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	18, 286
Hpy188III	TCNNGA	5 cut(s)	52, 118, 162, 191, 206
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	87, 188
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 129
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	2 cut(s)	114, 132
Hsp92II	CATG	2 cut(s)	8, 26
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	5 cut(s)	103, 128, 147, 176, 190
MaeII	ACGT	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	34, 43, 233
Mly113I	GGCGCC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	1 cut(s)	273
MspI	CCGG	1 cut(s)	177
MvnI	CGCG	2 cut(s)	53, 102
MwoI	GCNNNNNNNGC	2 cut(s)	108, 129
NaeI	GCCGGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	8, 26
NlaIV	GGNNCC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	19, 209
PkrI	GCNGC	2 cut(s)	104, 125
PluTI	GGCGCC	1 cut(s)	135
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	103, 124
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	2 cut(s)	117, 199
SfoI	GGCGCC	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	34, 43, 233
SsiI	CCGC	4 cut(s)	85, 102, 123, 174
SspDI	GGCGCC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	139, 207
TasI	AATT	3 cut(s)	34, 43, 233
TauI	GCSGC	2 cut(s)	105, 126
TfiI	GAWTC	2 cut(s)	19, 209
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	11, 93
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	43
ZraI	GACGTC	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.