Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

24027544 .. 24028352

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

197

Amino Acids

21.81

Weight (kDa)

5.22

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	3.7e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	4 cut(s)	141, 327, 340, 550
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	425
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	2 cut(s)	92, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	53, 199, 562, 584
AluI	AGCT	4 cut(s)	53, 199, 562, 584
Alw21I	GWGCWC	3 cut(s)	450, 502, 564
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	446, 498
AlwI	GGATC	4 cut(s)	141, 327, 340, 550
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	578
ApaLI	GTGCAC	2 cut(s)	446, 498
ApeKI	GCWGC	3 cut(s)	50, 293, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
BaeGI	GKGCMC	4 cut(s)	164, 306, 450, 502
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	262, 564
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	3 cut(s)	450, 502, 564
BbvI	GCAGC	3 cut(s)	62, 280, 571
BccI	CCATC	2 cut(s)	368, 583
BceAI	ACGGC	2 cut(s)	72, 466
BciT130I	CCWGG	2 cut(s)	94, 416
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	3 cut(s)	315, 360, 592
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 585
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	3 cut(s)	52, 295, 586
Bme1390I	CCNGG	2 cut(s)	94, 416
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	4 cut(s)	6, 245, 334, 355
BmrFI	CCNGG	2 cut(s)	94, 416
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	4 cut(s)	93, 179, 282, 531
Bpu10I	CCTNAGC	1 cut(s)	523
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	2 cut(s)	113, 578
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	486, 538
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	3 cut(s)	205, 299, 548
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	2 cut(s)	94, 416
BseDI	CCNNGG	2 cut(s)	486, 538
BseGI	GGATG	2 cut(s)	386, 575
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	537, 577
BseNI	ACTGG	3 cut(s)	205, 299, 548
BseRI	GAGGAG	3 cut(s)	44, 417, 420
BseSI	GKGCMC	4 cut(s)	164, 306, 450, 502
BseXI	GCAGC	3 cut(s)	62, 280, 571
BsiHKAI	GWGCWC	3 cut(s)	450, 502, 564
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	6 cut(s)	164, 262, 306, 450, 502, 564
Bsp13I	TCCGGA	1 cut(s)	578
Bsp143I	GATC	5 cut(s)	133, 186, 332, 409, 542
Bsp1720I	GCTNAGC	1 cut(s)	563
BspACI	CCGC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	536, 576
BspEI	TCCGGA	1 cut(s)	578
BspLI	GGNNCC	4 cut(s)	6, 245, 334, 355
BspPI	GGATC	4 cut(s)	141, 327, 340, 550
BsrI	ACTGG	3 cut(s)	205, 299, 548
BssECI	CCNNGG	2 cut(s)	486, 538
BssMI	GATC	5 cut(s)	133, 186, 332, 409, 542
BssNI	GRCGYC	1 cut(s)	459
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 416
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	523, 563
BstDSI	CCRYGG	1 cut(s)	538
BstEII	GGTNACC	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	386, 575
BstKTI	GATC	5 cut(s)	136, 189, 335, 412, 545
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	133, 186, 332, 409, 542
BstNI	CCWGG	2 cut(s)	94, 416
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	92, 414
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	4 cut(s)	164, 306, 450, 502
BstV1I	GCAGC	3 cut(s)	62, 280, 571
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	4 cut(s)	133, 186, 332, 542
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	4 cut(s)	133, 186, 332, 542
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	386, 575
BtsIMutI	CAGTG	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	354
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	3 cut(s)	70, 307, 503
CviJI	RGCY	9 cut(s)	53, 87, 199, 260, 293, 522, 562, 567, 584
CviKI_1	RGCY	9 cut(s)	53, 87, 199, 260, 293, 522, 562, 567, 584
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	523, 563
DpnI	GATC	5 cut(s)	135, 188, 334, 411, 544
DpnII	GATC	5 cut(s)	133, 186, 332, 409, 542
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	2 cut(s)	262, 564
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	562
EcoO65I	GGTNACC	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	92, 414
EcoT38I	GRGCYC	2 cut(s)	262, 564
FaeI	CATG	3 cut(s)	73, 310, 506
FaiI	YATR	6 cut(s)	71, 144, 210, 216, 308, 504
FatI	CATG	3 cut(s)	69, 306, 502
Fnu4HI	GCNGC	3 cut(s)	51, 294, 585
FokI	GGATG	2 cut(s)	373, 562
FriOI	GRGCYC	2 cut(s)	262, 564
Fsp4HI	GCNGC	3 cut(s)	51, 294, 585
FspBI	CTAG	3 cut(s)	315, 360, 592
GluI	GCNGC	3 cut(s)	51, 294, 585
GsuI	CTGGAG	4 cut(s)	93, 179, 282, 531
HapII	CCGG	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	73, 310, 506
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	357, 448, 500
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 557, 579
Hpy8I	GTNNAC	3 cut(s)	357, 448, 500
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	2 cut(s)	252, 459
HpyCH4V	TGCA	3 cut(s)	394, 448, 500
HpyF3I	CTNAG	2 cut(s)	523, 563
HpySE526I	ACGT	2 cut(s)	252, 459
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	73, 310, 506
Kpn2I	TCCGGA	1 cut(s)	578
Kzo9I	GATC	5 cut(s)	133, 186, 332, 409, 542
LmnI	GCTCC	2 cut(s)	301, 581
Lsp1109I	GCAGC	3 cut(s)	62, 280, 571
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 360, 592
MaeII	ACGT	2 cut(s)	252, 459
MaeIII	GTNAC	2 cut(s)	467, 530
MalI	GATC	5 cut(s)	135, 188, 334, 411, 544
MboI	GATC	5 cut(s)	133, 186, 332, 409, 542
MboII	GAAGA	2 cut(s)	422, 487
MflI	RGATCY	4 cut(s)	133, 186, 332, 542
MhlI	GDGCHC	6 cut(s)	164, 262, 306, 450, 502, 564
MluCI	AATT	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	53, 199
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	94, 416
MvaI	CCWGG	2 cut(s)	94, 416
NdeII	GATC	5 cut(s)	133, 186, 332, 409, 542
NlaIII	CATG	3 cut(s)	73, 310, 506
NlaIV	GGNNCC	4 cut(s)	6, 245, 334, 355
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 123, 178
PkrI	GCNGC	3 cut(s)	52, 295, 586
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	92, 414
PspEI	GGTNACC	1 cut(s)	467
PspGI	CCWGG	2 cut(s)	92, 414
PspN4I	GGNNCC	4 cut(s)	6, 245, 334, 355
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	4 cut(s)	133, 186, 332, 542
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 585
Sau3AI	GATC	5 cut(s)	133, 186, 332, 409, 542
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	94, 416
SduI	GDGCHC	6 cut(s)	164, 262, 306, 450, 502, 564
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 557
SmoI	CTYRAG	3 cut(s)	128, 261, 557
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	3 cut(s)	315, 360, 592
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	92, 414
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	2 cut(s)	255, 462
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	100, 123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	3 cut(s)	50, 293, 584
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	2 cut(s)	446, 498
VpaK11BI	GGWCC	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	3 cut(s)	315, 360, 592
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.