Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2610559 .. 2611971

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACGGCGGCGGAGAGGGGCTCGTGGCTCCGGCGACGTCTGGAGAGGCGATGGCGCCGCTCGACTGGAAGTTTTCTCAGGTTTTTGGAGAACAGACCGCCTGCGAGGAAGTTCAGGAAGGTACTCTTCTCGATTCTTTCCTTTCGTTTTCGGTTGAGGCTGGTGAGCTAACTGCTGCCAAAATTAATAACCTGATGTTCATTGTGGGAAATCCCAGCCAGTTCAAGATCCCTGACTGGTTTCTCAACACAAAGAAGGATTACAAAGATGGAATCACCGTGGTCTTCGACACTACTAGGGCCTTTGTGTGCGTGGACAGCACAGCAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGTGTTGAAGAACATATTTTGGCTGTTTGGGAGGATGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

138

Amino Acids

14.92

Weight (kDa)

4.39

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	51 - 93	5e-06	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	4 cut(s)	9, 12, 59, 99
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	2 cut(s)	38, 56
AfaI	GTAC	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	226, 377
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	300, 336
ApeKI	GCWGC	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	176, 268
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	46, 263
BceAI	ACGGC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	3 cut(s)	10, 59, 177
BlsI	GCNGC	3 cut(s)	11, 60, 178
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	30, 57
BpiI	GAAGAC	1 cut(s)	277
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	38, 56
BsaJI	CCNNGG	1 cut(s)	279
Bse1I	ACTGG	3 cut(s)	71, 220, 242
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	3 cut(s)	71, 220, 242
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	2 cut(s)	302, 338
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	32
BsnI	GGCC	2 cut(s)	302, 338
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	4 cut(s)	9, 12, 59, 99
BspANI	GGCC	2 cut(s)	302, 338
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	30, 57
BspPI	GGATC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	71, 220, 242
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	2 cut(s)	38, 56
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	2 cut(s)	38, 56
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	302, 338
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	8 cut(s)	22, 29, 161, 169, 219, 302, 338, 392
CviKI_1	RGCY	8 cut(s)	22, 29, 161, 169, 219, 302, 338, 392
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	78
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
FaeI	CATG	1 cut(s)	412
FaiI	YATR	2 cut(s)	384, 410
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	10, 59, 177
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	10, 59, 177
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	10, 59, 177
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	302, 338
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	2 cut(s)	38, 56
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	134, 273
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	176, 268
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	4 cut(s)	42, 116, 131, 226
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	113, 250
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	2 cut(s)	38, 56
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	230
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	228
MboII	GAAGA	4 cut(s)	119, 277, 360, 389
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	183
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	5 cut(s)	10, 40, 100, 151, 394
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	318
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	2 cut(s)	30, 57
PfeI	GAWTC	2 cut(s)	134, 273
PkrI	GCNGC	3 cut(s)	11, 60, 178
PluTI	GGCGCC	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	30, 57
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	10, 59, 177
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	5 cut(s)	41, 84, 124, 171, 195
SfoI	GGCGCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	4 cut(s)	9, 12, 59, 99
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	63, 132, 288
TasI	AATT	1 cut(s)	183
TauI	GCSGC	2 cut(s)	12, 61
TfiI	GAWTC	2 cut(s)	134, 273
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	17, 190
VspI	ATTAAT	1 cut(s)	186
XspI	CTAG	1 cut(s)	297
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.