Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000706.1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

11811 .. 13624

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000706.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggggtgttctgtaacaggcgttaagcctgcattggggattctcctttacagaggggctcgtggctccggcgacgtctggagaggcgatggagcagctcgactagaagttttctcaggtttttggagaacagaccgcctgcgaggaagttcaggaagggctggtgagctaactgctgccaaaattaataacctgatgttcattgtgggaaatccccgccagttcaagatccctgactggtttctcaacgcaaagaaggattacaaggatggaatcaccgtggtcttcgacactattagggccttcgagtgcgtggacagcacagcaagaccatttgccacagggggaagattgttggagtgtccaagaagcgttgaagaacatattttggctgtttgggaggatgtcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

137

Amino Acids

15.13

Weight (kDa)

8.93

Isoelectric Point (pI)

22.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AciI	CCGC	2 cut(s)	136, 217
AclWI	GGATC	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	226, 377
AluBI	AGCT	2 cut(s)	98, 169
AluI	AGCT	2 cut(s)	98, 169
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	95, 176
AseI	ATTAAT	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	176, 268
BanII	GRGCYC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	107, 163
BccI	CCATC	2 cut(s)	83, 263
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	2 cut(s)	96, 177
BlsI	GCNGC	2 cut(s)	97, 178
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	220, 242
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	274, 409
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	220, 242
BseXI	GCAGC	2 cut(s)	107, 163
BshFI	GGCC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	35
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	136, 217
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	220, 242
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	30, 140
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	274, 409
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	107, 163
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	274, 409
Cac8I	GCNNGC	2 cut(s)	30, 140
Cfr13I	GGNCC	1 cut(s)	300
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	8 cut(s)	28, 59, 66, 98, 161, 169, 302, 392
CviKI_1	RGCY	8 cut(s)	28, 59, 66, 98, 161, 169, 302, 392
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	412
FaiI	YATR	2 cut(s)	384, 410
FatI	CATG	1 cut(s)	408
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	96, 177
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	96, 177
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	2 cut(s)	96, 177
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	412
HinfI	GANTC	2 cut(s)	40, 273
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	2 cut(s)	176, 268
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	3 cut(s)	79, 153, 226
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	150, 250, 313
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	71, 92
Lsp1109I	GCAGC	2 cut(s)	107, 163
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	277, 360, 389
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	47, 77, 137, 394
MseI	TTAA	2 cut(s)	24, 186
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	40, 273
PkrI	GCNGC	2 cut(s)	97, 178
PshBI	ATTAAT	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	24, 186
SatI	GCNGC	2 cut(s)	96, 177
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	300
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	5 cut(s)	78, 100, 121, 171, 195
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	2 cut(s)	136, 217
SspMI	CTAG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	100, 288, 306
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	40, 273
Tru1I	TTAA	2 cut(s)	24, 186
Tru9I	TTAA	2 cut(s)	24, 186
TseI	GCWGC	2 cut(s)	95, 176
TspDTI	ATGAA	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	186
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.