Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

40668457 .. 40671207

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAATGGCGGTGCAGAAGGGCTTGCGGCTTCGGCGACGTCTGGAGCTGCGATGGCGCCACTCGACTGGATGTTTTCTCAAGTTTCTGGAGAACAGACCGCCGGGAGTGTTGAACATGAAAAGGGCGTCACAGCATTCCAGTTTCAGAGCCATAACCACTTTGCAAACGCATCTGTCGCAAGTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

63

Amino Acids

6.35

Weight (kDa)

4.89

Isoelectric Point (pI)

21.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	3 cut(s)	9, 26, 99
AcyI	GRCGYC	3 cut(s)	38, 56, 126
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	2 cut(s)	27, 48
BlsI	GCNGC	2 cut(s)	28, 49
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	179
BpmI	CTGGAG	2 cut(s)	63, 108
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	103
BsaHI	GRCGYC	3 cut(s)	38, 56, 126
Bse1I	ACTGG	2 cut(s)	71, 139
BseGI	GGATG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	71, 139
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	134
BspACI	CCGC	3 cut(s)	9, 26, 99
BspLI	GGNNCC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	71, 139
BssNI	GRCGYC	3 cut(s)	38, 56, 126
BstACI	GRCGYC	3 cut(s)	38, 56, 126
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 53, 176
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	1 cut(s)	115
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	4 cut(s)	22, 29, 47, 150
CviKI_1	RGCY	4 cut(s)	22, 29, 47, 150
DinI	GGCGCC	1 cut(s)	57
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
FaeI	CATG	1 cut(s)	119
FaiI	YATR	2 cut(s)	117, 153
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	27, 48
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	27, 48
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	27, 48
GsuI	CTGGAG	2 cut(s)	63, 108
HaeII	RGCGCY	1 cut(s)	59
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	3 cut(s)	38, 56, 126
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	147, 191
Hpy188III	TCNNGA	2 cut(s)	42, 87
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	14, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 53, 176
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	3 cut(s)	38, 56, 126
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	27, 52, 72, 115, 152
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	179
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	56
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	32, 53, 176
NarI	GGCGCC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	28, 49
PluTI	GGCGCC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	57
SatI	GCNGC	2 cut(s)	27, 48
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	2 cut(s)	41, 49
SfaNI	GCATC	1 cut(s)	179
SfoI	GGCGCC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SsiI	CCGC	3 cut(s)	9, 26, 99
SspDI	GGCGCC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	63
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	17, 132
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.