Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017370.1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1819

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017370.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

gagtttatgacatcgcggtggcgaaggaggaggaggctaggttagggtttgagttttcgggagctatctgctcgaaatcagtgacaatggcgccgaggctcggctccggggacgtatccggcttcaaaaatgaacggcggcggagaggggctcgtggctccggcgacgcctggagaggcgatggtgccgctagactagaagttttctcaggtttttggagaacagaccgcctgcgaggaagttcaggaagggctggtgagctaactgctgccaaaattaataacctgatgttcattgtgggaaatccccgccagttcaagatccctgactggtttctcaacgcaaagaaggattacaaggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

120

Amino Acids

13.29

Weight (kDa)

9.99

Isoelectric Point (pI)

22.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	90, 184
AccII	CGCG	1 cut(s)	16
AciI	CCGC	6 cut(s)	16, 138, 141, 188, 228, 309
AclWI	GGATC	1 cut(s)	315
AcyI	GRCGYC	2 cut(s)	91, 167
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	126, 318
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	64, 261
AluI	AGCT	2 cut(s)	64, 261
AlwI	GGATC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	268
AseI	ATTAAT	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	90, 184
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	3 cut(s)	38, 191, 196
BfoI	RGCGCY	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	139, 188, 269
BlsI	GCNGC	3 cut(s)	140, 189, 270
Bme1390I	CCNGG	2 cut(s)	108, 171
BmiI	GGNNCC	4 cut(s)	92, 105, 159, 186
BmrFI	CCNGG	2 cut(s)	108, 171
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BpmI	CTGGAG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	91, 167
BsaJI	CCNNGG	2 cut(s)	94, 107
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	312, 334
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	94, 107
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	312, 334
BseRI	GAGGAG	2 cut(s)	43, 46
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	16
BshNI	GGYRCC	2 cut(s)	90, 184
BsiSI	CCGG	3 cut(s)	107, 119, 161
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	6 cut(s)	16, 138, 141, 188, 228, 309
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	92, 105, 159, 186
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	90, 184
BsrI	ACTGG	2 cut(s)	312, 334
BssECI	CCNNGG	2 cut(s)	94, 107
BssMI	GATC	1 cut(s)	320
BssNI	GRCGYC	2 cut(s)	91, 167
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	91, 167
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	320
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	106, 169
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	93
CseI	GACGC	1 cut(s)	175
CviJI	RGCY	9 cut(s)	37, 64, 99, 104, 122, 151, 158, 253, 261
CviKI_1	RGCY	9 cut(s)	37, 64, 99, 104, 122, 151, 158, 253, 261
DdeI	CTNAG	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
FaiI	YATR	1 cut(s)	8
FaqI	GGGAC	1 cut(s)	124
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	3 cut(s)	139, 188, 269
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	3 cut(s)	139, 188, 269
FspBI	CTAG	3 cut(s)	38, 191, 196
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	3 cut(s)	139, 188, 269
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	94
HapII	CCGG	3 cut(s)	107, 119, 161
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	2 cut(s)	91, 167
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HpaII	CCGG	3 cut(s)	107, 119, 161
HphI	GGTGA	1 cut(s)	268
Hpy188III	TCNNGA	3 cut(s)	59, 245, 318
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	18, 242, 342
HpyCH4IV	ACGT	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	2 cut(s)	91, 167
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	3 cut(s)	61, 109, 163
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	3 cut(s)	38, 191, 196
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	275
Mly113I	GGCGCC	1 cut(s)	91
MnlI	CCTC	7 cut(s)	21, 24, 27, 89, 139, 169, 229
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	3 cut(s)	107, 119, 161
MspR9I	CCNGG	2 cut(s)	108, 171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	320
NlaIV	GGNNCC	4 cut(s)	92, 105, 159, 186
NmeAIII	GCCGAG	2 cut(s)	80, 119
NmuCI	GTSAC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	140, 189, 270
PluTI	GGCGCC	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	92, 105, 159, 186
PsuI	RGATCY	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	139, 188, 269
Sau3AI	GATC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	108, 171
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	43, 66, 116, 213, 263, 287
SfoI	GGCGCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	6 cut(s)	16, 138, 141, 188, 228, 309
SspDI	GGCGCC	1 cut(s)	90
SspMI	CTAG	3 cut(s)	38, 191, 196
StyD4I	CCNGG	2 cut(s)	106, 169
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	275
TauI	GCSGC	2 cut(s)	141, 190
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	146, 282
TspRI	CASTG	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	278
XspI	CTAG	3 cut(s)	38, 191, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.