Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

36648 .. 38229

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttggagcgtctcgaggatctgaaaacccaaactcaagcttggatcttcatctccgacctccataagcgtcggcgactcacaggtggtctgaccggaatgccgagcaaagatgacggggaaggcgaagccgaaaaagcatgtggcgatggagatccaggcgttaagcctgcattggggattctcctttacagaattggagctcgttcacatggaatcggcagaaatgaacggcggagaggggatagtggctccggcgacgtctggagaggcgatggagcactgtgtttgaacctaaagtggggctataggtataacataccagagttggctaaaaaatacaaggtttatgctatagacttgctgggcttcggttggagtgaaaaagcactggttgaatatgatgccatgatttggaaagatcaagtagtggacttcttgaaggagatagtgaaagaaccaacagttttgggttctgtgttgggtttttgcaggggacgattacaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

8.39

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	414
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	3 cut(s)	27, 53, 149
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	176, 301, 414
AgsI	TTSAA	3 cut(s)	292, 398, 442
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	2 cut(s)	41, 203
AluI	AGCT	2 cut(s)	41, 203
Alw21I	GWGCWC	2 cut(s)	205, 283
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	27, 53, 149
Ama87I	CYCGRG	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	205, 283
BccI	CCATC	2 cut(s)	143, 269
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	307, 354
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	21
BsaBI	GATNNNNATC	2 cut(s)	50, 153
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 301, 414
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	2 cut(s)	50, 153
BseBI	CCWGG	1 cut(s)	159
BseJI	GATNNNNATC	2 cut(s)	50, 153
BseLI	CCNNNNNNNGG	3 cut(s)	176, 301, 414
BseNI	ACTGG	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	205, 283
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	96, 255
BslI	CCNNNNNNNGG	3 cut(s)	176, 301, 414
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	205, 283
Bsp143I	GATC	4 cut(s)	19, 45, 154, 421
BspACI	CCGC	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	3 cut(s)	27, 53, 149
BsrI	ACTGG	1 cut(s)	396
BssMI	GATC	4 cut(s)	19, 45, 154, 421
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	285, 466
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	22, 48, 157, 424
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	19, 45, 154, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	2 cut(s)	307, 354
BstX2I	RGATCY	3 cut(s)	19, 45, 154
BstYI	RGATCY	3 cut(s)	19, 45, 154
BtgZI	GCGATG	2 cut(s)	162, 288
BtsIMutI	CAGTG	2 cut(s)	281, 389
Cac8I	GCNNGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	59
CviAII	CATG	3 cut(s)	141, 212, 409
CviJI	RGCY	8 cut(s)	41, 131, 169, 203, 252, 306, 332, 369
CviKI_1	RGCY	8 cut(s)	41, 131, 169, 203, 252, 306, 332, 369
DpnI	GATC	4 cut(s)	21, 47, 156, 423
DpnII	GATC	4 cut(s)	19, 45, 154, 421
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	3 cut(s)	144, 215, 412
FatI	CATG	3 cut(s)	140, 211, 408
FriOI	GRGCYC	1 cut(s)	205
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	286
HapII	CCGG	2 cut(s)	96, 255
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	144, 215, 412
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	3 cut(s)	78, 181, 216
HpaII	CCGG	2 cut(s)	96, 255
Hpy166II	GTNNAC	2 cut(s)	209, 433
Hpy188I	TCNGA	3 cut(s)	24, 58, 93
Hpy188III	TCNNGA	3 cut(s)	14, 265, 439
Hpy8I	GTNNAC	2 cut(s)	209, 433
Hpy99I	CGWCG	2 cut(s)	75, 263
HpyAV	CCTTC	2 cut(s)	116, 436
HpyCH4III	ACNGT	2 cut(s)	285, 466
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	173, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	144, 215, 412
Kzo9I	GATC	4 cut(s)	19, 45, 154, 421
LmnI	GCTCC	4 cut(s)	7, 200, 257, 278
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	261
MalI	GATC	4 cut(s)	21, 47, 156, 423
MboI	GATC	4 cut(s)	19, 45, 154, 421
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	3 cut(s)	19, 45, 154
MhlI	GDGCHC	2 cut(s)	205, 283
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	2 cut(s)	81, 356
MnlI	CCTC	4 cut(s)	10, 71, 233, 263
MseI	TTAA	2 cut(s)	165, 511
MspI	CCGG	2 cut(s)	96, 255
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	4 cut(s)	19, 45, 154, 421
NlaIII	CATG	3 cut(s)	144, 215, 412
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	181, 216
PflMI	CCANNNNNTGG	1 cut(s)	414
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	3 cut(s)	19, 45, 154
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	165, 511
Sau3AI	GATC	4 cut(s)	19, 45, 154, 421
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	205, 283
SetI	ASST	8 cut(s)	43, 63, 88, 205, 264, 297, 314, 348
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	307, 354
Sfr274I	CTCGAG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	14, 36
SmoI	CTYRAG	2 cut(s)	14, 36
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	285, 466
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	181, 216
Tru1I	TTAA	2 cut(s)	165, 511
Tru9I	TTAA	2 cut(s)	165, 511
TscAI	CASTG	2 cut(s)	288, 396
TspDTI	ATGAA	2 cut(s)	40, 243
TspRI	CASTG	2 cut(s)	288, 396
Van91I	CCANNNNNTGG	1 cut(s)	414
XceI	RCATGY	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.