Rroxscaffold_1G00028760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002552
Physical Location & Seq
Reverse (-)
36797727 .. 36809248
11522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028760.1

Sequence Viewer

Length: 411 bp
ATGCTCACCGCCGCCGCTACGGCCGCGCCGCCGTGCAAGGCCACCCCTGCATGTGCACAAGGACCATACGAAGCTAATGGAAGAAGTTTGTCTAGAGAGCTAGCTACTAAAGAACACATTCAATGCATGAAGAACAAAGACATGATGCCAACCAAAGAGGAGGCTAGGTTAGGGTTTGAGTTTTCGGGAGCTATCTGCTCGAAATCGGTGACAATGGCGCCGAGGCTCGCCTCCGGCGACGTATCCGCTTCAAGTTCCTTCTCTTTCGGTCGAGATTTACGACCTCATCGCCGTGCTTGTCCACTTGATTGTTCCCTAATCTCGTCCCGAGATTCACGCTTTGGTGTTCGATTGATGCATGATTTCCGATTCATGCTATTCATGATTCGGCAAACTTTTTCGCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

9.63

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 217
AccII CGCG 2 cut(s) 26, 403
AciI CCGC 6 cut(s) 9, 12, 15, 24, 29, 246
AcoI YGGCCR 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 122, 252
AluBI AGCT 4 cut(s) 74, 100, 104, 191
AluI AGCT 4 cut(s) 74, 100, 104, 191
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 21, 39
ApaLI GTGCAC 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 28, 220
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 58
BceAI ACGGC 3 cut(s) 16, 36, 276
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 3 cut(s) 93, 101, 165
BfoI RGCGCY 1 cut(s) 221
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 4 cut(s) 12, 15, 24, 29
BlsI GCNGC 4 cut(s) 13, 16, 25, 30
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 2 cut(s) 135, 345
BmtI GCTAGC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
BseDI CCNNGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 21
Bsh1236I CGCG 2 cut(s) 26, 403
Bsh1285I CGRYCG 2 cut(s) 24, 271
BshFI GGCC 2 cut(s) 23, 41
BshNI GGYRCC 1 cut(s) 217
BsiEI CGRYCG 2 cut(s) 24, 271
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 23, 41
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 58
Bsp68I TCGCGA 1 cut(s) 403
BspACI CCGC 6 cut(s) 9, 12, 15, 24, 29, 246
BspANI GGCC 2 cut(s) 23, 41
BspFNI CGCG 2 cut(s) 26, 403
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 102, 228
BstFNI CGCG 2 cut(s) 26, 403
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 2 cut(s) 28, 220
BstMCI CGRYCG 2 cut(s) 24, 271
BstMWI GCNNNNNNNGC 3 cut(s) 20, 23, 47
BstNSI RCATGY 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 58
BstUI CGCG 2 cut(s) 26, 403
BstZI CGGCCG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 23, 41
BtgZI GCGATG 1 cut(s) 272
BtuMI TCGCGA 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 102, 228
CciI TCATGA 1 cut(s) 381
CfoI GCGC 2 cut(s) 28, 220
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 6 cut(s) 51, 127, 142, 359, 373, 382
CviJI RGCY 8 cut(s) 23, 41, 74, 100, 104, 164, 191, 226
CviKI_1 RGCY 8 cut(s) 23, 41, 74, 100, 104, 164, 191, 226
DinI GGCGCC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 21
EagI CGGCCG 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 62
Eco52I CGGCCG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 128, 360
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
FaeI CATG 6 cut(s) 54, 130, 145, 362, 376, 385
FaiI YATR 8 cut(s) 52, 67, 128, 143, 360, 374, 383, 409
FaqI GGGAC 1 cut(s) 310
FatI CATG 6 cut(s) 50, 126, 141, 358, 372, 381
Fnu4HI GCNGC 4 cut(s) 12, 15, 24, 29
Fsp4HI GCNGC 4 cut(s) 12, 15, 24, 29
FspBI CTAG 3 cut(s) 93, 101, 165
GlaI GCGC 2 cut(s) 27, 219
GluI GCNGC 4 cut(s) 12, 15, 24, 29
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 2 cut(s) 23, 41
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 28, 220
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 6 cut(s) 54, 130, 145, 362, 376, 385
Hin6I GCGC 2 cut(s) 26, 218
HinP1I GCGC 2 cut(s) 26, 218
HinfI GANTC 3 cut(s) 332, 369, 385
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 56, 302
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 6 cut(s) 93, 186, 272, 327, 382, 402
Hpy8I GTNNAC 2 cut(s) 56, 302
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 5 cut(s) 36, 50, 56, 126, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 23, 47
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 6 cut(s) 54, 130, 145, 362, 376, 385
HspAI GCGC 2 cut(s) 26, 218
KasI GGCGCC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 2 cut(s) 60, 247
LweI GCATC 2 cut(s) 135, 345
MaeI CTAG 3 cut(s) 93, 101, 165
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 2 cut(s) 93, 142
MhlI GDGCHC 1 cut(s) 58
Mly113I GGCGCC 1 cut(s) 218
MnlI CCTC 5 cut(s) 151, 154, 216, 241, 294
Mph1103I ATGCAT 2 cut(s) 128, 360
MroXI GAANNNNTTC 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 26, 403
MwoI GCNNNNNNNGC 3 cut(s) 20, 23, 47
NarI GGCGCC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 6 cut(s) 54, 130, 145, 362, 376, 385
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 208
NruI TCGCGA 1 cut(s) 403
NsiI ATGCAT 2 cut(s) 128, 360
NspI RCATGY 1 cut(s) 54
PagI TCATGA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 277
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 332, 369, 385
PkrI GCNGC 4 cut(s) 13, 16, 25, 30
PluTI GGCGCC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 62
RruI TCGCGA 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 4 cut(s) 12, 15, 24, 29
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 58
SetI ASST 7 cut(s) 76, 102, 106, 170, 193, 243, 286
SfaNI GCATC 2 cut(s) 135, 345
SfoI GGCGCC 1 cut(s) 219
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 291
SsiI CCGC 6 cut(s) 9, 12, 15, 24, 29, 246
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 3 cut(s) 93, 101, 165
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 200, 271, 349
TaqII GACCGA 1 cut(s) 257
TauI GCSGC 4 cut(s) 14, 17, 26, 31
TfiI GAWTC 3 cut(s) 332, 369, 385
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 143, 361, 370
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 62
XbaI TCTAGA 1 cut(s) 92
XceI RCATGY 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 3 cut(s) 93, 101, 165
Zsp2I ATGCAT 2 cut(s) 128, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.