Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

43500147 .. 43500464

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0347500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTTTCCATCTTCGAAGCCTCTGGACCACCTGCAAAACAGAGACAAACGGATGGAGCAAGCAGAACTCCAGGTACATGGCCACCATCATCATGGATAGCGCCAAGGCCGTCGTCCTCGACATCAGCTTCCCTGTTCATCCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAACGCCGTTGCTTGGGCCCCGCACAGCTCTTTCCACATCTGCACTGCCGGGGACTACTCACAGGCCCTCATCGACCTCTCCTCCATGGCCCAACCCGTCGAGGGTGGCCTCGATCCCATTCTAGCCTACACTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

6.15

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	189, 278
AjnI	CCWGG	2 cut(s)	71, 165
AluBI	AGCT	2 cut(s)	129, 204
AluI	AGCT	2 cut(s)	129, 204
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	7 cut(s)	81, 108, 168, 192, 240, 264, 283
ApaI	GGGCCC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	5 cut(s)	27, 192, 193, 241, 265
AsuC2I	CCSGG	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	196
BccI	CCATC	3 cut(s)	18, 48, 95
BceAI	ACGGC	2 cut(s)	95, 167
BciT130I	CCWGG	2 cut(s)	73, 167
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	73, 167, 226
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	5 cut(s)	27, 192, 193, 241, 265
BmiI	GGNNCC	3 cut(s)	164, 194, 195
BmrFI	CCNGG	3 cut(s)	73, 167, 226
BpmI	CTGGAG	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	105, 225, 261
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 278
BseBI	CCWGG	2 cut(s)	73, 167
BseDI	CCNNGG	3 cut(s)	105, 225, 261
BseGI	GGATG	2 cut(s)	59, 139
BseLI	CCNNNNNNNGG	2 cut(s)	189, 278
BseRI	GAGGAG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	7 cut(s)	83, 110, 170, 194, 242, 266, 285
BshNI	GGYRCC	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	143, 225
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	189, 278
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	7 cut(s)	83, 110, 170, 194, 242, 266, 285
Bsp119I	TTCGAA	1 cut(s)	16
Bsp120I	GGGCCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	7 cut(s)	83, 110, 170, 194, 242, 266, 285
BspLI	GGNNCC	3 cut(s)	164, 194, 195
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	105, 225, 261
BssMI	GATC	1 cut(s)	289
BssT1I	CCWWGG	2 cut(s)	105, 261
Bst2UI	CCWGG	2 cut(s)	73, 167
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	62, 172
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	59, 139
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	289
BstMCI	CGRYCG	1 cut(s)	147
BstNI	CCWGG	2 cut(s)	73, 167
BstSCI	CCNGG	3 cut(s)	71, 165, 224
BstSLI	GKGCMC	1 cut(s)	196
BstXI	CCANNNNNNTGG	2 cut(s)	79, 94
BsuRI	GGCC	7 cut(s)	83, 110, 170, 194, 242, 266, 285
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	59, 139
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	62, 172
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	5 cut(s)	27, 192, 193, 241, 265
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	79, 94, 262
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	105, 261
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	27
EcoO109I	RGGNCCY	2 cut(s)	193, 241
EcoRII	CCWGG	2 cut(s)	71, 165
EcoT14I	CCWWGG	2 cut(s)	105, 261
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	105, 261
FaeI	CATG	3 cut(s)	82, 97, 265
FaiI	YATR	3 cut(s)	80, 95, 263
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	78, 93, 261
FauI	CCCGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	66, 126
FriOI	GRGCYC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	7 cut(s)	83, 110, 170, 194, 242, 266, 285
HapII	CCGG	2 cut(s)	143, 225
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	3 cut(s)	82, 97, 265
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	143, 225
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	116, 152, 278
HpyCH4V	TGCA	3 cut(s)	36, 157, 219
Hsp92II	CATG	3 cut(s)	82, 97, 265
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	299
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	8 cut(s)	32, 128, 153, 254, 263, 268, 271, 296
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	143, 225
MspR9I	CCNGG	3 cut(s)	73, 167, 226
MvaI	CCWGG	2 cut(s)	73, 167
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	3 cut(s)	82, 97, 265
NlaIV	GGNNCC	3 cut(s)	164, 194, 195
NspV	TTCGAA	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	71, 165
PspGI	CCWGG	2 cut(s)	71, 165
PspN4I	GGNNCC	3 cut(s)	164, 194, 195
PspOMI	GGGCCC	1 cut(s)	192
PspPI	GGNCC	5 cut(s)	27, 192, 193, 241, 265
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	5 cut(s)	27, 192, 193, 241, 265
ScrFI	CCNGG	3 cut(s)	73, 167, 226
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	5 cut(s)	35, 77, 131, 206, 255
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	92
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	71, 165, 224
StyI	CCWWGG	2 cut(s)	105, 261
TaqI	TCGA	6 cut(s)	16, 120, 150, 249, 276, 288
TscAI	CASTG	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	2 cut(s)	66, 301
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.