Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

25137429 .. 25138844

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAACGGCGGAGGAGAGGGGCTCGTGGCTCCGGCGACGTCTAGAGAGGCGATGGCGCAGCTCGACTGGAAGTTTTCTCAGGTTTTTGGAGAACAGACCGCCTGCGAGGAAGTTCAGGAAGGGATGATCTCAAGAGGCTCAAGAAGATCAGGAATCACCGTGGTCTTCGACACTACTAGGGCCTTCGTGTGCGTGGACAGCACAGCAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCATTGAAGAACATATTTTGGCTGTTTGGGAGGATGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

97

Amino Acids

10.55

Weight (kDa)

4.75

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	9, 99
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AoxI	GGCC	2 cut(s)	180, 216
ApeKI	GCWGC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	42, 177
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	157
BplI	GAGNNNNNCTC	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	115, 124
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	129, 289
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	182, 218
BsiSI	CCGG	1 cut(s)	32
BsnI	GGCC	2 cut(s)	182, 218
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	126, 146
BspACI	CCGC	2 cut(s)	9, 99
BspANI	GGCC	2 cut(s)	182, 218
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	126, 146
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	129, 289
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	129, 149
BstMBI	GATC	2 cut(s)	126, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	182, 218
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	129, 289
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	22, 29, 61, 138, 182, 218, 272
CviKI_1	RGCY	7 cut(s)	22, 29, 61, 138, 182, 218, 272
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	128, 148
DpnII	GATC	2 cut(s)	126, 146
EaeI	YGGCCR	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	1 cut(s)	292
FaiI	YATR	2 cut(s)	264, 290
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	42, 177
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	182, 218
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	5 cut(s)	42, 116, 132, 141, 150
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	113, 193
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	126, 146
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	45, 52, 65, 101, 115, 135, 207
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	42, 177
MaeII	ACGT	1 cut(s)	38
MalI	GATC	2 cut(s)	128, 148
MboI	GATC	2 cut(s)	126, 146
MboII	GAAGA	4 cut(s)	156, 157, 240, 269
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	5, 10, 40, 100, 128, 274
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	126, 146
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	180
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	126, 146
Sau96I	GGNCC	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	41, 63, 84
SmlI	CTYRAG	2 cut(s)	130, 139
SmoI	CTYRAG	2 cut(s)	130, 139
SsiI	CCGC	2 cut(s)	9, 99
SspMI	CTAG	2 cut(s)	42, 177
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	63, 168
TfiI	GAWTC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	41
XspI	CTAG	2 cut(s)	42, 177
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.