Rroxscaffold_1G00028750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002552
Physical Location & Seq
Reverse (-)
36796311 .. 36797711
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028750.1

Sequence Viewer

Length: 261 bp
ATGAACGGTGGCGGAGAGGGGCTCGTAGCTCCGGCGACGTACGGAGAGGCAATGGCGCCGCTCGGCGGAACTTTTCTCGGGTTTTGGAGAACGGACCACTGCGAGGAAGTTCGGGATGGAATCACCGTGGTCTTCGACACTACTAGGGCCTTCGTGTGCGTGGACAGCACAGCAAGACCATTGGCCACGGGAGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGGATGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.26

Weight (kDa)

4.52

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 61
AciI CCGC 3 cut(s) 12, 59, 66
AcoI YGGCCR 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 65, 103
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 147, 183
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 94, 147
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 124
BccI CCATC 1 cut(s) 110
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 94, 147
BmiI GGNNCC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 124
BplI GAGNNNNNCTC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 126, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 103
Bse3DI GCAATG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 126, 186
BseGI GGATG 2 cut(s) 121, 256
BseLI CCNNNNNNNGG 2 cut(s) 65, 103
BseMI GCAATG 1 cut(s) 57
BshFI GGCC 2 cut(s) 149, 185
BshNI GGYRCC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 32
BsiWI CGTACG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 65, 103
BsnI GGCC 2 cut(s) 149, 185
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 3 cut(s) 12, 59, 66
BspANI GGCC 2 cut(s) 149, 185
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 126, 186
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 8, 127
BstACI GRCGYC 1 cut(s) 56
BstDSI CCRYGG 2 cut(s) 126, 186
BstF5I GGATG 2 cut(s) 121, 256
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 149, 185
BtgI CCRYGG 2 cut(s) 126, 186
BtsCI GGATG 2 cut(s) 121, 256
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 94, 147
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 256
CviJI RGCY 5 cut(s) 22, 29, 149, 185, 239
CviKI_1 RGCY 5 cut(s) 22, 29, 149, 185, 239
CviQI GTAC 1 cut(s) 40
DinI GGCGCC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 183
EciI GGCGGA 2 cut(s) 27, 81
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 1 cut(s) 259
FaiI YATR 2 cut(s) 231, 257
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 149, 185
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 8, 127
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 61
MboII GAAGA 3 cut(s) 124, 207, 236
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 185
MluNI TGGCCA 1 cut(s) 185
Mly113I GGCGCC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 10, 40, 97, 185, 241
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 165
NarI GGCGCC 1 cut(s) 56
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 42
PfeI GAWTC 1 cut(s) 120
Pfl23II CGTACG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 60
PluTI GGCGCC 1 cut(s) 59
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 94, 147
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 59
Sau96I GGNCC 2 cut(s) 94, 147
SduI GDGCHC 1 cut(s) 24
SetI ASST 2 cut(s) 31, 41
SfoI GGCGCC 1 cut(s) 57
SinI GGWCC 1 cut(s) 94
SsiI CCGC 3 cut(s) 12, 59, 66
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 8, 127
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 120
TscAI CASTG 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 57, 107
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 94
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.