Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

18747096 .. 18748179

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCCGAGCAACGATGACGGGGAAGGCGAAGCCGAAGAAGCATGTGGCGATGGAGATCCAGGCGTTAAGCCTGCATTGGGGATTCTCCTTTACAGAATTGGAGCTCGTTCACATGGAATCGGCAGAAATGAACGGCGGCGGAGAGGGGCTCGTGGCTCCGGCGACGTCTGGAGAGGCGATGGAGCCGCTCGACTGGAAGTTTTCTCAAGTTTTTGGAGAACAGACCGCCTGCGAGGAAGTTCAGGAAGGGCTGGTGAGCTAACTGCTGCCAAAATTAATAACCTGATGTTCATTGTGGGAAATCCCCGCCAGTTCAAGATCCCTGACTGGTTTCTCAACGCAAAGAAGGATTACAAGGATGGTAAATATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

9.66

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	83 - 123	6.1e-07	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	5 cut(s)	136, 139, 186, 226, 307
AclWI	GGATC	2 cut(s)	50, 313
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	104, 259
AluI	AGCT	2 cut(s)	104, 259
Alw21I	GWGCWC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	50, 313
ApeKI	GCWGC	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	106, 151
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	44, 173, 353
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	60
BisI	GCNGC	3 cut(s)	137, 186, 267
BlsI	GCNGC	3 cut(s)	138, 187, 268
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	157, 184
BmrFI	CCNGG	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	198, 310, 332
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	3 cut(s)	198, 310, 332
BseXI	GCAGC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	106, 151
Bsp143I	GATC	2 cut(s)	55, 318
BspACI	CCGC	5 cut(s)	136, 139, 186, 226, 307
BspLI	GGNNCC	2 cut(s)	157, 184
BspPI	GGATC	2 cut(s)	50, 313
BsrBI	CCGCTC	1 cut(s)	188
BsrI	ACTGG	3 cut(s)	198, 310, 332
BssMI	GATC	2 cut(s)	55, 318
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	72, 230
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	2 cut(s)	58, 321
BstMBI	GATC	2 cut(s)	55, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	55, 318
BstYI	RGATCY	2 cut(s)	55, 318
BtgZI	GCGATG	2 cut(s)	63, 192
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	72, 230
CviAII	CATG	2 cut(s)	42, 113
CviJI	RGCY	8 cut(s)	32, 70, 104, 149, 156, 185, 251, 259
CviKI_1	RGCY	8 cut(s)	32, 70, 104, 149, 156, 185, 251, 259
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	57, 320
DpnII	GATC	2 cut(s)	55, 318
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	104
Eco24I	GRGCYC	2 cut(s)	106, 151
Eco53kI	GAGCTC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	106, 151
FaeI	CATG	2 cut(s)	45, 116
FaiI	YATR	2 cut(s)	43, 114
FatI	CATG	2 cut(s)	41, 112
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	3 cut(s)	137, 186, 267
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	106, 151
Fsp4HI	GCNGC	3 cut(s)	137, 186, 267
GluI	GCNGC	3 cut(s)	137, 186, 267
GsuI	CTGGAG	1 cut(s)	190
HapII	CCGG	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	45, 116
HinfI	GANTC	2 cut(s)	82, 117
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	169, 243, 316
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	17, 240, 340
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	45, 116
Kzo9I	GATC	2 cut(s)	55, 318
LmnI	GCTCC	3 cut(s)	101, 161, 182
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	165
MalI	GATC	2 cut(s)	57, 320
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	2 cut(s)	55, 318
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	2 cut(s)	55, 318
MhlI	GDGCHC	2 cut(s)	106, 151
MluCI	AATT	2 cut(s)	96, 273
MnlI	CCTC	3 cut(s)	137, 167, 227
MseI	TTAA	2 cut(s)	66, 276
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	55, 318
NlaIII	CATG	2 cut(s)	45, 116
NlaIV	GGNNCC	2 cut(s)	157, 184
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	82, 117
PkrI	GCNGC	3 cut(s)	138, 187, 268
PshBI	ATTAAT	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	157, 184
PsuI	RGATCY	2 cut(s)	55, 318
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	66, 276
SatI	GCNGC	3 cut(s)	137, 186, 267
Sau3AI	GATC	2 cut(s)	55, 318
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	106, 151
SetI	ASST	4 cut(s)	106, 168, 261, 285
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	96, 273
SsiI	CCGC	5 cut(s)	136, 139, 186, 226, 307
SspI	AATATT	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	190
TasI	AATT	2 cut(s)	96, 273
TauI	GCSGC	2 cut(s)	139, 188
TfiI	GAWTC	2 cut(s)	82, 117
Tru1I	TTAA	2 cut(s)	66, 276
Tru9I	TTAA	2 cut(s)	66, 276
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	144, 280
VspI	ATTAAT	1 cut(s)	276
XceI	RCATGY	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.