Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

48332238 .. 48333240

Gene Structure 1003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAGCTCAGGGATGATCTCAAGAGGCTCAAGAAGATCAGTTTGATACTGTTGTTGTTTTTACATGCTACTGAGAACGCAGATTCTATGACTACATGCTACATGCTACATGCTTTGAACATTGAATGTTTGAGTCAAGTCTTGCTGGTTTCTCATCATGTTTTACTTTATTTTGTGGTATCTACATGGAATCACCGTGGTCTTCGACACTACTCGGGCCTTCGTGTGCGTGGACAGCACAGCAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

97

Amino Acids

11.2

Weight (kDa)

10.4

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	64 - 86	1.3e-06	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	118, 125
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	217, 253
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	214
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BalI	TGGCCA	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	5, 14
BsaJI	CCNNGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	22, 63
BshFI	GGCC	2 cut(s)	219, 255
BsiHKCI	CYCGRG	1 cut(s)	214
BsnI	GGCC	2 cut(s)	219, 255
BsoBI	CYCGRG	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	16, 36
BspANI	GGCC	2 cut(s)	219, 255
BspCNI	CTCAG	2 cut(s)	21, 64
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	16, 36
Bst4CI	ACNGT	2 cut(s)	51, 197
BstDEI	CTNAG	2 cut(s)	8, 72
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	19, 39
BstMBI	GATC	2 cut(s)	16, 36
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	4 cut(s)	68, 99, 106, 113
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	219, 255
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	6 cut(s)	65, 96, 103, 110, 158, 186
CviJI	RGCY	4 cut(s)	7, 28, 219, 255
CviKI_1	RGCY	4 cut(s)	7, 28, 219, 255
DdeI	CTNAG	2 cut(s)	8, 72
DpnI	GATC	2 cut(s)	18, 38
DpnII	GATC	2 cut(s)	16, 36
EaeI	YGGCCR	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	214
FaeI	CATG	6 cut(s)	68, 99, 106, 113, 161, 189
FaiI	YATR	7 cut(s)	66, 89, 97, 104, 111, 159, 187
FatI	CATG	6 cut(s)	64, 95, 102, 109, 157, 185
FokI	GGATG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	219, 255
Hin1II	CATG	6 cut(s)	68, 99, 106, 113, 161, 189
HinfI	GANTC	3 cut(s)	83, 133, 190
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	22, 31
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	51, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	8, 72
Hsp92II	CATG	6 cut(s)	68, 99, 106, 113, 161, 189
Kzo9I	GATC	2 cut(s)	16, 36
LpnPI	CCDG	2 cut(s)	131, 244
MalI	GATC	2 cut(s)	18, 38
MboI	GATC	2 cut(s)	16, 36
MboII	GAAGA	3 cut(s)	46, 194, 277
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	2 cut(s)	16, 36
NlaIII	CATG	6 cut(s)	68, 99, 106, 113, 161, 189
NspI	RCATGY	4 cut(s)	68, 99, 106, 113
PfeI	GAWTC	2 cut(s)	83, 190
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	16, 36
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	142
SetI	ASST	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	20, 29
SmoI	CTYRAG	2 cut(s)	20, 29
TaaI	ACNGT	2 cut(s)	51, 197
TaqI	TCGA	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	83, 190
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	4 cut(s)	68, 99, 106, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.