Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

18532722 .. 18534127

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00396980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAACGGCGGCAGAGAGGGGCTCGTGGCTCCGGCGACGTTTGGAGAGGCGATGGCGCCGCTCGGCGGAAGTTTTCTCGGTTTTTGGAGAACGGACCGCCTGCGAGGAAGTGGTGAGCTAAGCGCTGCCAAAATTAATAACCCGATGTTCATTGTGGGAAATCCCCGCCAGCTCAAGATCCCTAATCGGTTTCTCAACACAAAGAAGGATTACAAGGATGGAATCACCGTGGTCTTCGACACTACTAGGGCCTTCGTGTGCGTGGACAGCACAGCAAGACCATTGGCCATAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGGATGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

8.74

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	5 cut(s)	9, 59, 66, 97, 166
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	2 cut(s)	118, 172
AluI	AGCT	2 cut(s)	118, 172
AlwI	GGATC	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	2 cut(s)	249, 285
ApeKI	GCWGC	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	58, 125
AspS9I	GGNCC	2 cut(s)	94, 249
AsuHPI	GGTGA	2 cut(s)	125, 217
AvaII	GGWCC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	46, 212
BceAI	ACGGC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	2 cut(s)	59, 126
BisI	GCNGC	3 cut(s)	10, 59, 126
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	3 cut(s)	11, 60, 127
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 249
BmiI	GGNNCC	2 cut(s)	30, 57
BpiI	GAAGAC	1 cut(s)	226
BplI	GAGNNNNNCTC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	223, 358
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	251, 287
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	2 cut(s)	251, 287
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	177
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	5 cut(s)	9, 59, 66, 97, 166
BspANI	GGCC	2 cut(s)	251, 287
BspLI	GGNNCC	2 cut(s)	30, 57
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	101, 170
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	223, 358
BstH2I	RGCGCY	2 cut(s)	59, 126
BstHHI	GCGC	2 cut(s)	58, 125
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	251, 287
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	223, 358
Cac8I	GCNNGC	2 cut(s)	101, 170
CfoI	GCGC	2 cut(s)	58, 125
Cfr13I	GGNCC	2 cut(s)	94, 249
CpoI	CGGWCCG	1 cut(s)	94
CspI	CGGWCCG	1 cut(s)	94
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	7 cut(s)	22, 29, 118, 172, 251, 287, 341
CviKI_1	RGCY	7 cut(s)	22, 29, 118, 172, 251, 287, 341
DdeI	CTNAG	1 cut(s)	119
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
FaeI	CATG	1 cut(s)	361
FaiI	YATR	3 cut(s)	290, 333, 359
FatI	CATG	1 cut(s)	357
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	10, 59, 126
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	10, 59, 126
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	57, 124
GluI	GCNGC	3 cut(s)	10, 59, 126
HaeII	RGCGCY	2 cut(s)	59, 126
HaeIII	GGCC	2 cut(s)	251, 287
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	2 cut(s)	58, 125
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	2 cut(s)	56, 123
HinP1I	GCGC	2 cut(s)	56, 123
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	125, 217
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	199, 262
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	2 cut(s)	56, 123
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	45, 113, 182
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	226, 309, 338
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	10, 40, 98, 343
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	2 cut(s)	30, 57
NmeAIII	GCCGAG	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	11, 60, 127
PluTI	GGCGCC	1 cut(s)	59
PshBI	ATTAAT	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	30, 57
PspPI	GGNCC	2 cut(s)	94, 249
PsuI	RGATCY	1 cut(s)	177
Rsr2I	CGGWCCG	1 cut(s)	94
RsrII	CGGWCCG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	10, 59, 126
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	94, 249
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	41, 120, 174
SfoI	GGCGCC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	5 cut(s)	9, 59, 66, 97, 166
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	132
TauI	GCSGC	2 cut(s)	12, 61
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	17, 139
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	135
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.