Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

22030807 .. 22032182

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAACGGCGGCGGAGAGGGGCTCGTGGCTCCGGCGACGTCTGGAGAGGCGATGGCGCCGCTCGACTGGAAGTTTTCTCAGGTTTTTGGAGAACAAACCGCCTGCGAGGAAGTTGAGGAAGTGTTGATTTGGGCTTTGTTTAAAAGCTTAGAGTTTGGTGTATTCTGTAATTGGTTTACAATATTGAATCACCGTGGTCTTCAACACTACGAGGGCCTTCGTGTGCGTGGACAGCACAACAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

96

Amino Acids

10.7

Weight (kDa)

7.85

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	61 - 85	6.3e-06	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	4 cut(s)	9, 12, 59, 99
AcoI	YGGCCR	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	38, 56
AgsI	TTSAA	2 cut(s)	187, 203
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
AoxI	GGCC	2 cut(s)	214, 250
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	191
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	2 cut(s)	10, 59
BlsI	GCNGC	2 cut(s)	11, 60
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	30, 57
BpiI	GAAGAC	1 cut(s)	191
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	38, 56
BsaJI	CCNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	216, 252
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	32
BsnI	GGCC	2 cut(s)	216, 252
Bsp1286I	GDGCHC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	9, 12, 59, 99
BspANI	GGCC	2 cut(s)	216, 252
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	30, 57
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	38, 56
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	194
BstACI	GRCGYC	2 cut(s)	38, 56
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	78, 148
BstDSI	CCRYGG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	216, 252
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	214
CviJI	RGCY	6 cut(s)	22, 29, 134, 147, 216, 252
CviKI_1	RGCY	6 cut(s)	22, 29, 134, 147, 216, 252
DdeI	CTNAG	2 cut(s)	78, 148
DinI	GGCGCC	1 cut(s)	57
DraI	TTTAAA	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	10, 59
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	10, 59
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	10, 59
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	216, 252
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	2 cut(s)	38, 56
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	177, 230
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	2 cut(s)	177, 230
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	2 cut(s)	78, 148
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	2 cut(s)	38, 56
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	27, 45, 52, 65, 115, 241
MaeII	ACGT	1 cut(s)	38
MbiI	CCGCTC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	191, 274
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	252
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	10, 40, 100, 109, 205
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	232
NarI	GGCGCC	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	30, 57
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	11, 60
PluTI	GGCGCC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	30, 57
PspPI	GGNCC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	10, 59
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	41, 84, 149
SfoI	GGCGCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	4 cut(s)	9, 12, 59, 99
SspDI	GGCGCC	1 cut(s)	55
SspI	AATATT	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	169
TauI	GCSGC	2 cut(s)	12, 61
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.