Rh6BG237700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002552
Physical Location & Seq
Forward (+)
44398245 .. 44398460
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG237700.1

Sequence Viewer

Length: 216 bp
ATGTTGGAGCGTCTCGAGGATCCGAAAACCCAAACTCAAGCTTGGATTTTCCTCTCTGACCTCCAGAGGCGCCGGCAACTCACCGGTGGTCTGACCGGAATGCGGAGCAACGATGACAAGGAATGCGAAGCTGAAGAAGCATGTGGCGAAGGAGATCCAGGTGAAGATCGACGCGTCTACGACAAATCGCCAAAGCGGGAAGGCCGGAATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.23

Weight (kDa)

5.16

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 103, 196
AclWI GGATC 3 cut(s) 14, 27, 149
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 172
AgeI ACCGGT 1 cut(s) 83
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 41, 131
AluI AGCT 2 cut(s) 41, 131
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 14, 27, 149
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 1 cut(s) 202
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 73, 173
AvaI CYCGRG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 21, 71
BmrFI CCNGG 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 70
BsaWI WCCGGW 2 cut(s) 83, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 2 cut(s) 72, 83
BseBI CCWGG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 4 cut(s) 73, 84, 96, 205
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 17
BsmBI CGTCTC 1 cut(s) 17
BsmI GAATGC 2 cut(s) 105, 128
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 3 cut(s) 19, 154, 166
BspACI CCGC 2 cut(s) 103, 196
BspANI GGCC 1 cut(s) 204
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 21, 71
BspPI GGATC 3 cut(s) 14, 27, 149
BspT107I GGYRCC 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 72, 83
BssAI RCCGGY 2 cut(s) 72, 83
BssMI GATC 3 cut(s) 19, 154, 166
BssNI GRCGYC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 74
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 22, 157, 169
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 19, 154, 166
BstMWI GCNNNNNNNGC 2 cut(s) 137, 210
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 157
BstUI CGCG 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 19, 154
BstYI RGATCY 2 cut(s) 19, 154
BsuRI GGCC 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 2 cut(s) 72, 83
CseI GACGC 2 cut(s) 163, 180
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 41, 131, 204
CviKI_1 RGCY 3 cut(s) 41, 131, 204
DinI GGCGCC 1 cut(s) 71
DpnI GATC 3 cut(s) 21, 156, 168
DpnII GATC 3 cut(s) 19, 154, 166
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 157
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 144
FaiI YATR 1 cut(s) 142
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 177
GlaI GCGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 1 cut(s) 204
HapII CCGG 4 cut(s) 73, 84, 96, 205
HgaI GACGC 2 cut(s) 163, 180
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 208
HpaII CCGG 4 cut(s) 73, 84, 96, 205
HphI GGTGA 2 cut(s) 73, 173
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 24, 58, 93
Hpy188III TCNNGA 2 cut(s) 14, 64
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 143, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 210
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 1 cut(s) 70
KasI GGCGCC 1 cut(s) 69
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Kzo9I GATC 3 cut(s) 19, 154, 166
LmnI GCTCC 2 cut(s) 7, 105
LpnPI CCDG 6 cut(s) 77, 86, 97, 109, 144, 171
MalI GATC 3 cut(s) 21, 156, 168
MboI GATC 3 cut(s) 19, 154, 166
MboII GAAGA 2 cut(s) 146, 176
MflI RGATCY 2 cut(s) 19, 154
MluI ACGCGT 1 cut(s) 172
Mly113I GGCGCC 1 cut(s) 70
MnlI CCTC 4 cut(s) 10, 60, 62, 71
MroNI GCCGGC 1 cut(s) 72
MspI CCGG 4 cut(s) 73, 84, 96, 205
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 105, 128
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 137, 210
NaeI GCCGGC 1 cut(s) 74
NarI GGCGCC 1 cut(s) 70
NdeII GATC 3 cut(s) 19, 154, 166
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 21, 71
NspI RCATGY 1 cut(s) 144
PaeR7I CTCGAG 1 cut(s) 14
PctI GAATGC 2 cut(s) 105, 128
PdiI GCCGGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 21, 71
PsuI RGATCY 2 cut(s) 19, 154
Sau3AI GATC 3 cut(s) 19, 154, 166
ScrFI CCNGG 1 cut(s) 159
SetI ASST 4 cut(s) 43, 63, 133, 163
SfoI GGCGCC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 14
SgrAI CRCCGGYG 1 cut(s) 83
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 14, 36
SmoI CTYRAG 2 cut(s) 14, 36
SsiI CCGC 2 cut(s) 103, 196
SspDI GGCGCC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 157
TaqI TCGA 2 cut(s) 15, 169
TfiI GAWTC 1 cut(s) 208
XceI RCATGY 1 cut(s) 144
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.