Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

25530170 .. 25531182

Gene Structure 1013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAATCTTTAGCTTCTAGTTATGCTGGAATTTATTTCCTAGCTTGCCTTATCTTGTATGCCATGCTGGTTTCATCACCAAATATAAACATTGCATTTGCTTCTTCTGCTAGTACTTCTACTGAAGCAGAGGCCCTTCTCGAATGGAAATCTAGCTTTAAAAAAGATACCCAGAATAATCTGACCTCATGGACGTACTCTCCTAGAGCAAATGCAAGTCCATGCAATGTTTGGACTGGTATTTCTTGCAACACTGCTGGAAGTGTCAACAGAATAAACCTCACCAATTCTGGTATACAAGGTACACTACATGAATTTCCATTCCTGTCTTTCCCTAATCTTGAATATGTTGACCTCAGCTTGAATAAAATCTTCGATGCCATCCCGCCTAAGATCAGTTCTCTCTCCAAACTTATTTATCTCGATCTATCCTACAATGAATTGTCTGGGAAAATTCCACCAGAAATTGGTCTTCTAACAAATCTTGAGGTCCTACACAGGGACGTAGCCACTCACAAGGCTACTTGGGCTGTAGCCCAAGGGATAATTTGGCCCAAAATGCGTCAAGTATGGAACTTCAGATCGGTTCAGCCTTCCACTCTTCCAGAGTTCCAGCTTCCAGGCTCCAGCCACGGAGCCACCTCCAATCGCTGCAAACCACAGAGCCACCTCCAATCGCTGCGAGCCACGGAGCCGGGAGCCACCTCCAATCTCAGAGTTTCAGTCCACCGAGCCACTTCCTACTCCCACTCTCCTCGTCTCCCCGTTCAGAACTTCAGATCAATTTTGATTCCACCTCCTACTCTCACTCTCCTCCGCCACCGTCCACCGAGCCACCTCCACTGCGGTCTGCATCTTGGATTCTCTGCGACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

292

Amino Acids

32.14

Weight (kDa)

9.46

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	41 - 84	4.1e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	112 - 165	9.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	3 cut(s)	386, 817, 846
AcsI	RAATTY	3 cut(s)	30, 314, 453
AcuI	CTGAAG	3 cut(s)	144, 562, 760
AfaI	GTAC	3 cut(s)	115, 197, 304
AfiI	CCNNNNNNNGG	2 cut(s)	467, 499
AgsI	TTSAA	2 cut(s)	344, 364
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	5 cut(s)	14, 44, 156, 360, 616
AluI	AGCT	5 cut(s)	14, 44, 156, 360, 616
Alw26I	GTCTC	1 cut(s)	764
AoxI	GGCC	2 cut(s)	132, 551
ApeKI	GCWGC	2 cut(s)	651, 679
ApoI	RAATTY	3 cut(s)	30, 314, 453
AspS9I	GGNCC	3 cut(s)	133, 490, 552
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	2 cut(s)	69, 274
AvaII	GGWCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	638, 666
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	5 cut(s)	18, 41, 111, 153, 204
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	2 cut(s)	652, 680
BlsI	GCNGC	2 cut(s)	653, 681
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	621, 696
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	133, 490, 552
BmiI	GGNNCC	4 cut(s)	625, 637, 693, 700
BmrFI	CCNGG	2 cut(s)	621, 696
BmsI	GCATC	2 cut(s)	367, 862
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	696
BsaJI	CCNNGG	3 cut(s)	538, 631, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 499
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	2 cut(s)	90, 232
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	538, 631, 687
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	467, 499
BseMI	GCAATG	2 cut(s)	90, 232
BseMII	CTCAG	2 cut(s)	370, 727
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	744, 803
BseXI	GCAGC	2 cut(s)	638, 666
BshFI	GGCC	2 cut(s)	134, 553
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	467, 499
BsmAI	GTCTC	1 cut(s)	764
BsmBI	CGTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	134, 553
Bsp143I	GATC	4 cut(s)	393, 424, 581, 779
BspACI	CCGC	3 cut(s)	386, 817, 846
BspANI	GGCC	2 cut(s)	134, 553
BspCNI	CTCAG	2 cut(s)	369, 726
BspLI	GGNNCC	4 cut(s)	625, 637, 693, 700
BsrDI	GCAATG	2 cut(s)	90, 232
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	538, 631, 687
BssMI	GATC	4 cut(s)	393, 424, 581, 779
BssNAI	GTATAC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	538
Bst1107I	GTATAC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	2 cut(s)	824, 874
Bst6I	CTCTTC	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	46, 684
BstDEI	CTNAG	3 cut(s)	356, 390, 713
BstDSI	CCRYGG	2 cut(s)	631, 687
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	396, 427, 584, 782
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	4 cut(s)	393, 424, 581, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 527, 559
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	619, 694
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	638, 666
BstV2I	GAAGAC	1 cut(s)	464
BstZ17I	GTATAC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	134, 553
BtgI	CCRYGG	2 cut(s)	631, 687
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	2 cut(s)	252, 841
BtsIMutI	CAGTG	3 cut(s)	252, 841, 879
Cac8I	GCNNGC	2 cut(s)	46, 684
Cfr13I	GGNCC	3 cut(s)	133, 490, 552
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	114, 196, 303
CviAII	CATG	4 cut(s)	64, 189, 222, 311
CviQI	GTAC	3 cut(s)	114, 196, 303
DdeI	CTNAG	3 cut(s)	356, 390, 713
DpnI	GATC	4 cut(s)	395, 426, 583, 781
DpnII	GATC	4 cut(s)	393, 424, 581, 779
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	806
Eco130I	CCWWGG	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	144, 562, 760
EcoO109I	RGGNCCY	2 cut(s)	133, 490
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	764
FaeI	CATG	4 cut(s)	67, 192, 225, 314
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	63, 188, 221, 310
FauI	CCCGC	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	652, 680
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	652, 680
FspBI	CTAG	5 cut(s)	18, 41, 111, 153, 204
GluI	GCNGC	2 cut(s)	652, 680
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	134, 553
HapII	CCGG	1 cut(s)	695
HgaI	GACGC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	67, 192, 225, 314
HincII	GTYRAC	2 cut(s)	268, 352
HindII	GTYRAC	2 cut(s)	268, 352
HinfI	GANTC	2 cut(s)	790, 861
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	2 cut(s)	69, 274
Hpy166II	GTNNAC	6 cut(s)	268, 296, 305, 352, 727, 827
Hpy188I	TCNGA	5 cut(s)	183, 581, 716, 771, 779
Hpy188III	TCNNGA	5 cut(s)	140, 341, 422, 485, 605
Hpy8I	GTNNAC	6 cut(s)	268, 296, 305, 352, 727, 827
HpyAV	CCTTC	2 cut(s)	146, 603
HpyCH4III	ACNGT	2 cut(s)	824, 874
HpyCH4IV	ACGT	2 cut(s)	194, 504
HpyCH4V	TGCA	6 cut(s)	95, 215, 225, 249, 654, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 527, 559
HpyF3I	CTNAG	3 cut(s)	356, 390, 713
HpySE526I	ACGT	2 cut(s)	194, 504
Hsp92II	CATG	4 cut(s)	67, 192, 225, 314
Kzo9I	GATC	4 cut(s)	393, 424, 581, 779
LmnI	GCTCC	4 cut(s)	629, 635, 691, 698
Lsp1109I	GCAGC	2 cut(s)	638, 666
LweI	GCATC	2 cut(s)	367, 862
MaeI	CTAG	5 cut(s)	18, 41, 111, 153, 204
MaeII	ACGT	2 cut(s)	194, 504
MalI	GATC	4 cut(s)	395, 426, 583, 781
MboI	GATC	4 cut(s)	393, 424, 581, 779
MboII	GAAGA	4 cut(s)	96, 364, 464, 593
MluCI	AATT	8 cut(s)	30, 286, 314, 440, 453, 465, 546, 783
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	2 cut(s)	621, 696
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	3 cut(s)	107, 527, 559
NciI	CCSGG	1 cut(s)	696
NdeII	GATC	4 cut(s)	393, 424, 581, 779
NlaIII	CATG	4 cut(s)	67, 192, 225, 314
NlaIV	GGNNCC	4 cut(s)	625, 637, 693, 700
PfeI	GAWTC	2 cut(s)	790, 861
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	653, 681
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	4 cut(s)	625, 637, 693, 700
PspPI	GGNCC	3 cut(s)	133, 490, 552
PspPPI	RGGWCCY	1 cut(s)	490
RsaI	GTAC	3 cut(s)	115, 197, 304
RsaNI	GTAC	3 cut(s)	114, 196, 303
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	652, 680
Sau3AI	GATC	4 cut(s)	393, 424, 581, 779
Sau96I	GGNCC	3 cut(s)	133, 490, 552
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	621, 696
SfaNI	GCATC	2 cut(s)	367, 862
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	8 cut(s)	30, 286, 314, 440, 453, 465, 546, 783
SsiI	CCGC	3 cut(s)	386, 817, 846
SspMI	CTAG	5 cut(s)	18, 41, 111, 153, 204
StyD4I	CCNGG	2 cut(s)	619, 694
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	2 cut(s)	824, 874
TaiI	ACGT	2 cut(s)	197, 507
TaqI	TCGA	3 cut(s)	141, 375, 423
TasI	AATT	8 cut(s)	30, 286, 314, 440, 453, 465, 546, 783
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	790, 861
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	3 cut(s)	259, 848, 879
TseI	GCWGC	2 cut(s)	651, 679
TspDTI	ATGAA	4 cut(s)	17, 63, 327, 453
TspGWI	ACGGA	2 cut(s)	648, 704
TspRI	CASTG	3 cut(s)	259, 848, 879
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	3 cut(s)	30, 314, 453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	5 cut(s)	18, 41, 111, 153, 204
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.