Rh4CG252200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002552
Physical Location & Seq
Reverse (-)
50209897 .. 50210178
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG252200.1

Sequence Viewer

Length: 282 bp
ATGGCGCTGAGGCTCGGCTCCGGCGACGTATCCGGCTTCAAGTTCCTTCTCTTTCTGGTCGAGATTTACGACCTCATCGCCGTGCTTGTCCACTTGATTGTTCCCTCATCTCGTCGTGAGATTCACGCTTTGGTGTTCAGATTGATGCACGATTCGGCAAACTTTTTCGCGATTATAAGTAGTGGTGAGAGAAATGAACAGTGGCGGAGAGGGGCTCGTGGCTCCAGCGATGTCTGGAGAGGCGATGGCGCCGCTCGACTGGAAGTTTTCTCAGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.44

Weight (kDa)

8.4

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 254
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 205, 252
AcyI GRCGYC 1 cut(s) 249
AgsI TTSAA 1 cut(s) 40
AspLEI GCGC 2 cut(s) 7, 251
AsuHPI GGTGA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 8
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 65
BciVI GTATCC 1 cut(s) 40
BfoI RGCGCY 2 cut(s) 8, 252
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 3 cut(s) 19, 223, 250
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 2 cut(s) 208, 256
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 2 cut(s) 21, 33
Bsp1286I GDGCHC 1 cut(s) 217
Bsp68I TCGCGA 1 cut(s) 170
BspACI CCGC 2 cut(s) 205, 252
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 3 cut(s) 19, 223, 250
BspT107I GGYRCC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 249
BssSI CACGAG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 249
BstDEI CTNAG 2 cut(s) 8, 271
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 2 cut(s) 8, 252
BstHHI GCGC 2 cut(s) 7, 251
BstUI CGCG 1 cut(s) 170
BsuI GTATCC 1 cut(s) 40
BtgZI GCGATG 3 cut(s) 61, 243, 258
BtsIMutI CAGTG 1 cut(s) 206
BtuMI TCGCGA 1 cut(s) 170
CfoI GCGC 2 cut(s) 7, 251
CviJI RGCY 5 cut(s) 13, 18, 36, 215, 222
CviKI_1 RGCY 5 cut(s) 13, 18, 36, 215, 222
DdeI CTNAG 2 cut(s) 8, 271
DinI GGCGCC 1 cut(s) 250
EciI GGCGGA 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
FaiI YATR 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 2 cut(s) 6, 250
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 208, 256
HaeII RGCGCY 2 cut(s) 8, 252
HapII CCGG 2 cut(s) 21, 33
HhaI GCGC 2 cut(s) 7, 251
Hin1I GRCGYC 1 cut(s) 249
Hin6I GCGC 2 cut(s) 5, 249
HinP1I GCGC 2 cut(s) 5, 249
HinfI GANTC 2 cut(s) 121, 152
HpaII CCGG 2 cut(s) 21, 33
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 4 cut(s) 61, 116, 169, 235
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 29, 117
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 8, 271
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 249
HspAI GCGC 2 cut(s) 5, 249
KasI GGCGCC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 23, 227
LpnPI CCDG 7 cut(s) 34, 41, 46, 220, 238, 245, 258
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 27
MbiI CCGCTC 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 217
Mly113I GGCGCC 1 cut(s) 249
MnlI CCTC 5 cut(s) 3, 83, 115, 203, 233
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 21, 33
MvnI CGCG 1 cut(s) 170
NarI GGCGCC 1 cut(s) 249
NlaIV GGNNCC 3 cut(s) 19, 223, 250
NruI TCGCGA 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 66
PfeI GAWTC 2 cut(s) 121, 152
PkrI GCNGC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 252
PsiI TTATAA 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 19, 223, 250
RruI TCGCGA 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 252
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 30, 75, 277
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 80
SsiI CCGC 2 cut(s) 205, 252
SspDI GGCGCC 1 cut(s) 248
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 60, 256
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 121, 152
TscAI CASTG 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.