Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2612080 .. 2613207

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGTAACACGTGGACCAGAACCTTGGGGTTTGGGTGGCACGTGCGCCTAATACACGGTTCGGCATTCCGGTATGTTTTAGTTCGACGGTGGCCCAGTAGTTTGCCACATGAGACTGGCCTGCACATGCTCTCACCTTCAAGTCAGGGCGCGTCGAGCCAGCCAATTGCCGGAGTTTATGACATCGCGGTGGCGAAGGAGGAGGAGGCTAGGTTTGGGTTTGAGTTTTCGGGAGCTATCTGCTCGAAATCGGTGACAATGGCGCTGAGGCTCGGCTCCGGCGACGTATCCGGCTTCAAGTTCCTTCTCTTTATGGTCGAGATTTACGACCTCATCGCCGTGCTTGTCCACTTGATTGTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.33

Weight (kDa)

7.98

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 188
AciI	CCGC	1 cut(s)	188
AcvI	CACGTG	2 cut(s)	12, 43
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	141, 298
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	92, 118
AspLEI	GCGC	3 cut(s)	48, 152, 265
AspS9I	GGNCC	2 cut(s)	15, 93
AsuHPI	GGTGA	2 cut(s)	126, 265
AvaII	GGWCC	1 cut(s)	15
BbrPI	CACGTG	2 cut(s)	12, 43
BbvCI	CCTCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	323
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 93
BmiI	GGNNCC	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	12, 43
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	96, 121
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	96, 121
BseRI	GAGGAG	2 cut(s)	215, 218
BsgI	GTGCAG	1 cut(s)	107
Bsh1236I	CGCG	2 cut(s)	152, 188
BshFI	GGCC	2 cut(s)	94, 120
BsiSI	CCGG	4 cut(s)	70, 171, 279, 291
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	94, 120
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	94, 120
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	152, 188
BspLI	GGNNCC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	96, 121
BssECI	CCNNGG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	59, 90
BstBAI	YACGTR	2 cut(s)	12, 43
BstC8I	GCNNGC	2 cut(s)	122, 161
BstDEI	CTNAG	1 cut(s)	266
BstFNI	CGCG	2 cut(s)	152, 188
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	3 cut(s)	48, 152, 265
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	130
BstUI	CGCG	2 cut(s)	152, 188
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	94, 120
BtgZI	GCGATG	2 cut(s)	169, 319
Cac8I	GCNNGC	2 cut(s)	122, 161
CfoI	GCGC	3 cut(s)	48, 152, 265
Cfr13I	GGNCC	2 cut(s)	15, 93
CseI	GACGC	1 cut(s)	141
CviAII	CATG	2 cut(s)	110, 127
CviJI	RGCY	9 cut(s)	94, 120, 159, 163, 209, 236, 271, 276, 294
CviKI_1	RGCY	9 cut(s)	94, 120, 159, 163, 209, 236, 271, 276, 294
DdeI	CTNAG	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	15
Eco72I	CACGTG	2 cut(s)	12, 43
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	113, 130
FaiI	YATR	5 cut(s)	75, 111, 128, 180, 314
FatI	CATG	2 cut(s)	109, 126
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	3 cut(s)	47, 151, 264
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	94, 120
HapII	CCGG	4 cut(s)	70, 171, 279, 291
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	3 cut(s)	48, 152, 265
Hin1II	CATG	2 cut(s)	113, 130
Hin6I	GCGC	3 cut(s)	46, 150, 263
HinP1I	GCGC	3 cut(s)	46, 150, 263
HpaII	CCGG	4 cut(s)	70, 171, 279, 291
HphI	GGTGA	2 cut(s)	126, 265
Hpy166II	GTNNAC	2 cut(s)	15, 349
Hpy188III	TCNNGA	2 cut(s)	231, 319
Hpy8I	GTNNAC	2 cut(s)	15, 349
Hpy99I	CGWCG	3 cut(s)	90, 157, 287
HpyAV	CCTTC	3 cut(s)	147, 190, 314
HpyCH4III	ACNGT	2 cut(s)	59, 90
HpyCH4IV	ACGT	3 cut(s)	11, 42, 285
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	3 cut(s)	11, 42, 285
Hsp92II	CATG	2 cut(s)	113, 130
HspAI	GCGC	3 cut(s)	46, 150, 263
LmnI	GCTCC	2 cut(s)	233, 281
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	3 cut(s)	11, 42, 285
MaeIII	GTNAC	2 cut(s)	5, 253
MfeI	CAATTG	1 cut(s)	165
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	5 cut(s)	193, 196, 199, 261, 341
MslI	CAYNNNNRTG	2 cut(s)	188, 338
MspI	CCGG	4 cut(s)	70, 171, 279, 291
MunI	CAATTG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	2 cut(s)	152, 188
MwoI	GCNNNNNNNGC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	113, 130
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 324
PctI	GAATGC	1 cut(s)	65
PmaCI	CACGTG	2 cut(s)	12, 43
PmlI	CACGTG	2 cut(s)	12, 43
Ppu21I	YACGTR	2 cut(s)	12, 43
PspCI	CACGTG	2 cut(s)	12, 43
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	15, 93
RseI	CAYNNNNRTG	2 cut(s)	188, 338
Sau96I	GGNCC	2 cut(s)	15, 93
SetI	ASST	8 cut(s)	14, 26, 45, 139, 215, 238, 288, 333
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	188, 338
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	59, 90
TaiI	ACGT	3 cut(s)	14, 45, 288
TaqI	TCGA	4 cut(s)	85, 155, 245, 318
TasI	AATT	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	15
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.