Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

2079488 .. 2081097

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAATGGCGGTGCAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGTGCCACTCGACTGGATGTTTTCTCAAGTTTCTGGAGAACAGACCGCCGGCGAGGAAGTTCAGGAAGTGAGAGGAAAAGTTGAAGCAATCTTCTTAAAGCACAATGTAATTGATGAGTATGATGAACAATCCGAGGTTGCAGACTGGATTAGAATTAAGATGGTCCCCCTCTTCCATTTCTATAAAGATGGTGTTCTCTTGGAAGCATTCCCAACTAGAGACGAGGAGAAGATCACTGCGGCAATTCGTAAATACACATCTCCTGCAACATCTGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

4.57

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	26
AciI	CCGC	5 cut(s)	9, 26, 47, 99, 293
AcyI	GRCGYC	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	24
BccI	CCATC	3 cut(s)	46, 208, 236
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	27, 48, 294
BlsI	GCNGC	3 cut(s)	28, 49, 295
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	57, 219
BpmI	CTGGAG	2 cut(s)	63, 108
BpuEI	CTTGAG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	71, 203
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	71, 203
BseRI	GAGGAG	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	5 cut(s)	9, 26, 47, 99, 293
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	57, 219
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	71, 203
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	24, 103
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	24, 103
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	217
CviJI	RGCY	2 cut(s)	22, 29
CviKI_1	RGCY	2 cut(s)	22, 29
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	267
FaiI	YATR	2 cut(s)	174, 237
FaqI	GGGAC	1 cut(s)	203
Fnu4HI	GCNGC	3 cut(s)	27, 48, 294
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	27, 48, 294
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	3 cut(s)	27, 48, 294
GsuI	CTGGAG	2 cut(s)	63, 108
HapII	CCGG	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	187, 328
Hpy188III	TCNNGA	3 cut(s)	42, 87, 116
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	14, 194, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	27, 52, 72, 101, 115, 184, 330
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	287
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	1 cut(s)	285
MboII	GAAGA	3 cut(s)	136, 217, 295
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	4 cut(s)	162, 207, 297, 329
MnlI	CCTC	5 cut(s)	100, 119, 181, 233, 271
MreI	CGCCGGCG	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	101
MseI	TTAA	2 cut(s)	149, 210
MspI	CCGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	260
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	285
NgoMIV	GCCGGC	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	57, 219
PctI	GAATGC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	28, 49, 295
PspN4I	GGNNCC	2 cut(s)	57, 219
PspPI	GGNCC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	149, 210
SatI	GCNGC	3 cut(s)	27, 48, 294
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	2 cut(s)	41, 192
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	162, 207, 297, 329
SsiI	CCGC	5 cut(s)	9, 26, 47, 99, 293
SspMI	CTAG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	162, 207, 297, 329
TauI	GCSGC	3 cut(s)	29, 50, 296
Tru1I	TTAA	2 cut(s)	149, 210
Tru9I	TTAA	2 cut(s)	149, 210
TscAI	CASTG	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	17, 192
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	217
XspI	CTAG	1 cut(s)	270
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.