Rroxscaffold_7G00210170

Belongs to the universal ribosomal protein uS13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002552
Physical Location & Seq
Reverse (-)
60423662 .. 60425035
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210170.1

Sequence Viewer

Length: 345 bp
ATGAACGGCGGCGGGGAGGGGCTCGTGGCTCGGGCGACGTCCGGAGAGGCGATGGCGCCGCTCGACCGGAAGTTTTCTCGTGTTTTTGGAGAACGGACCGCTGCGAGGAAGTTCGGGAAGGTGGTTGCCAATGGCTTGCGTATGAAGCTCGGGGATGATCTCAAGAGGCTCAAGAAGATCGGATTCTATGACTACATGCTACATGCTTTGAACATTGAATGTTTGAGGCAAGTCTTGCTGGAATCACCGTGGTCTTTGACACTACTAGGGCCTTCGTGTGCGTGGACAGCACAGCAAGACCATTGGCCACGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S13

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

10.15

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 4 cut(s) 9, 12, 59, 99
AcoI YGGCCR 1 cut(s) 305
AcyI GRCGYC 2 cut(s) 38, 56
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 211, 218
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Ama87I CYCGRG 2 cut(s) 30, 149
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 2 cut(s) 269, 305
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 96, 269
AsuHPI GGTGA 1 cut(s) 237
AvaI CYCGRG 2 cut(s) 30, 149
AvaII GGWCC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 307
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 2 cut(s) 23, 78
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 3 cut(s) 10, 59, 102
BlsI GCNGC 3 cut(s) 11, 60, 103
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 30, 149
BmgT120I GGNCC 2 cut(s) 96, 269
BmiI GGNNCC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 146, 155
BsaHI GRCGYC 2 cut(s) 38, 56
BsaJI CCNNGG 2 cut(s) 248, 308
BsaWI WCCGGW 2 cut(s) 41, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 248, 308
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 271, 307
BshNI GGYRCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 2 cut(s) 30, 149
BsiSI CCGG 2 cut(s) 42, 67
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 2 cut(s) 271, 307
BsoBI CYCGRG 2 cut(s) 30, 149
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 157, 177
BspACI CCGC 4 cut(s) 9, 12, 59, 99
BspANI GGCC 2 cut(s) 271, 307
BspEI TCCGGA 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 248, 308
BssMI GATC 2 cut(s) 157, 177
BssNI GRCGYC 2 cut(s) 38, 56
BssSI CACGAG 2 cut(s) 23, 78
Bst2BI CACGAG 2 cut(s) 23, 78
Bst4CI ACNGT 1 cut(s) 249
BstACI GRCGYC 2 cut(s) 38, 56
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 137
BstDSI CCRYGG 2 cut(s) 248, 308
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 160, 180
BstMBI GATC 2 cut(s) 157, 177
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 145, 235, 287
BstNSI RCATGY 2 cut(s) 199, 206
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 271, 307
BtgI CCRYGG 2 cut(s) 248, 308
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 96, 269
CpoI CGGWCCG 1 cut(s) 96
CspI CGGWCCG 1 cut(s) 96
CviAII CATG 2 cut(s) 196, 203
CviJI RGCY 7 cut(s) 22, 29, 135, 148, 169, 271, 307
CviKI_1 RGCY 7 cut(s) 22, 29, 135, 148, 169, 271, 307
DinI GGCGCC 1 cut(s) 57
DpnI GATC 2 cut(s) 159, 179
DpnII GATC 2 cut(s) 157, 177
EaeI YGGCCR 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 30, 149
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaeI CATG 2 cut(s) 199, 206
FaiI YATR 4 cut(s) 143, 189, 197, 204
FatI CATG 2 cut(s) 195, 202
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 10, 59, 102
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 3 cut(s) 10, 59, 102
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 10, 59, 102
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 271, 307
HapII CCGG 2 cut(s) 42, 67
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 2 cut(s) 38, 56
Hin1II CATG 2 cut(s) 199, 206
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 2 cut(s) 183, 242
HpaII CCGG 2 cut(s) 42, 67
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 4 cut(s) 42, 115, 163, 172
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 112, 282
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 235, 287
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 2 cut(s) 38, 56
Hsp92II CATG 2 cut(s) 199, 206
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 41
Kzo9I GATC 2 cut(s) 157, 177
LpnPI CCDG 3 cut(s) 55, 80, 224
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 38
MalI GATC 2 cut(s) 159, 179
MbiI CCGCTC 1 cut(s) 61
MboI GATC 2 cut(s) 157, 177
MboII GAAGA 2 cut(s) 187, 328
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 307
MluNI TGGCCA 1 cut(s) 307
Mly113I GGCGCC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 5 cut(s) 10, 40, 99, 159, 219
Mox20I TGGCCA 1 cut(s) 307
MroI TCCGGA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 307
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 42, 67
MwoI GCNNNNNNNGC 3 cut(s) 145, 235, 287
NarI GGCGCC 1 cut(s) 56
NdeII GATC 2 cut(s) 157, 177
NlaIII CATG 2 cut(s) 199, 206
NlaIV GGNNCC 1 cut(s) 57
NspI RCATGY 2 cut(s) 199, 206
PfeI GAWTC 2 cut(s) 183, 242
PkrI GCNGC 3 cut(s) 11, 60, 103
PluTI GGCGCC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 96, 269
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SatI GCNGC 3 cut(s) 10, 59, 102
Sau3AI GATC 2 cut(s) 157, 177
Sau96I GGNCC 2 cut(s) 96, 269
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 41, 123, 150
SfoI GGCGCC 1 cut(s) 57
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 161, 170
SmoI CTYRAG 2 cut(s) 161, 170
SsiI CCGC 4 cut(s) 9, 12, 59, 99
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 63
TauI GCSGC 2 cut(s) 12, 61
TfiI GAWTC 2 cut(s) 183, 242
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 2 cut(s) 17, 158
TspGWI ACGGA 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 96
XceI RCATGY 2 cut(s) 199, 206
XspI CTAG 1 cut(s) 266
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.