Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

4219412 .. 4220825

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAACGGCTGCAGAGAGGGGCTCGTGGCTCCGGCGACGTCTGGAGAGGCGATGGCGCCGCTCGACTGGAAGTTTTCTCAGGTTTTTGGAGAAGAGACCTCCTGCGAGGAAGTTCAGGAAGGAATCACCGTGATCTTCGACACTACTAAGGCCTTCGTGTGCGTGGACAGCACAACAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGGATGCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0000278 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0010921 GO:0016311 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0032502 GO:0032991 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0060255 GO:0065007 GO:0065009 GO:0070262 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

WD40

Protein Analysis

87

Amino Acids

9.47

Weight (kDa)

4.3

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	2 cut(s)	38, 56
AgsI	TTSAA	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	150, 186
ApeKI	GCWGC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	23
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	2 cut(s)	10, 59
BlsI	GCNGC	2 cut(s)	11, 60
BmiI	GGNNCC	2 cut(s)	30, 57
BmsI	GCATC	1 cut(s)	244
BplI	GAGNNNNNCTC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	38, 56
BsaI	GGTCTC	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	152, 188
BshNI	GGYRCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	152, 188
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	152, 188
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	30, 57
BspMAI	CTGCAG	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	71
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	38, 56
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	38, 56
BstDEI	CTNAG	2 cut(s)	78, 147
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	152, 188
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	58
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	6 cut(s)	9, 22, 29, 152, 188, 242
CviKI_1	RGCY	6 cut(s)	9, 22, 29, 152, 188, 242
DdeI	CTNAG	2 cut(s)	78, 147
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	234, 260
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	10, 59
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	10, 59
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	10, 59
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	152, 188
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	2 cut(s)	38, 56
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	42, 116
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	113, 163
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	78, 147
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	2 cut(s)	38, 56
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	27, 45, 52, 65, 101, 115, 177
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	134
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	104, 127, 210, 239
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	10, 40, 100, 109, 244
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	168
NarI	GGCGCC	1 cut(s)	56
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	30, 57
PceI	AGGCCT	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	11, 60
PluTI	GGCGCC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	30, 57
PstI	CTGCAG	1 cut(s)	14
SatI	GCNGC	2 cut(s)	10, 59
Sau3AI	GATC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	41, 84, 101
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	57
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	59
SspDI	GGCGCC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	63, 138
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.