RchiOBHm_Chr4g0389801

phosphatase 2A 55 kDa regulatory subunit B

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
4832582 .. 4835520
2939 bp
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UTR
Exon/CDS
Intron
PRQ36290

Sequence Viewer

Length: 138 bp
ATGAATGGCGGTGGAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGTGCCACTCGACTGGATGTTTTCTCAAGTTTCTGGAGAACAGACCGCCGGCGAGGAAGTTCAGGAAGATACAAATTTGATTTAA

Protein Analysis

45

Amino Acids

4.56

Weight (kDa)

4.05

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 26
AciI CCGC 4 cut(s) 9, 26, 47, 99
AcsI RAATTY 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 127
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 24
BccI CCATC 1 cut(s) 46
BisI GCNGC 2 cut(s) 27, 48
BlsI GCNGC 2 cut(s) 28, 49
BmiI GGNNCC 1 cut(s) 57
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 63, 108
BpuEI CTTGAG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 24
BspACI CCGC 4 cut(s) 9, 26, 47, 99
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 24, 103
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstUI CGCG 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 24, 103
Cfr10I RCCGGY 1 cut(s) 101
CviJI RGCY 2 cut(s) 22, 29
CviKI_1 RGCY 2 cut(s) 22, 29
Eco24I GRGCYC 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 27, 48
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 27, 48
GluI GCNGC 2 cut(s) 27, 48
GsuI CTGGAG 2 cut(s) 63, 108
HapII CCGG 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 38
HpaII CCGG 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 42, 87, 116
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 38
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 5 cut(s) 27, 52, 72, 101, 115
MaeII ACGT 1 cut(s) 38
MbiI CCGCTC 1 cut(s) 47
MboII GAAGA 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 1 cut(s) 127
MnlI CCTC 1 cut(s) 100
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 136
MspI CCGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 28, 49
PspN4I GGNNCC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 136
SatI GCNGC 2 cut(s) 27, 48
SduI GDGCHC 1 cut(s) 24
SetI ASST 1 cut(s) 41
SgrAI CRCCGGYG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 127
SsiI CCGC 4 cut(s) 9, 26, 47, 99
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 63
TasI AATT 1 cut(s) 127
TauI GCSGC 2 cut(s) 29, 50
Tru1I TTAA 1 cut(s) 136
Tru9I TTAA 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 127
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.