Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Reverse (-)

75466674 .. 75477097

Gene Structure 10424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG477900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGATGACTACAAAAAGACCAGTCCCATTGGAGCACTGCCTATTTTACTCCGGAGAACTTTACAAGATATGTGAAAGTGAAAGCTTCATTCCTCAGGGCTTCAAAGCTGCAAAAGATACATTCAAGAAAAAGAATAGTCCTGCCACTGGCGGCGGCGGTGGTGGATCACGGGCTCCAGCTTCTGCTTCAGCTTCTCACGATGGGGCTCGAGGTCAAAAACGTGAAACTTCACATTCAGGAAAACAGAAGCAATCGGGTGCCCATAACTCAGGGAATTTATCCAGAACTGGTGGAGCAAATCAACACAACGGCAATGGCATGAACAATTGGGGTTTAAGAAGATCAGATGCTTCTTCGTGGTTGTCACTTATTAACAAGCTCTCAAAGAAGTCACTATTACCTGTGGTTATATTTTGTTTCTCAAAGAGTCGCTGTGATAGGTCAGCTGATAGCATGTCAGGAATTGACCTCACAAGTAGTTCTGAGAAAAGTCAGATTCGTGTTTTCTGTGACAAAGCATTTTCACGGCTGAAGGGATCCGACAGGAATTTACCTCAGGTTGTCAGAGTTCATCAAAACCTTCTCCATAGAGGGATTGGTGTTCATCATGCAGGACTTCTTCCAATTTTTAAGGAAGTTGTCGAAATGCTCTTTTGTCGAGGAGTTTGTGACATCGCTGTGGCGACGGAGGAGGAGGCTAGGTTAAGGTTTGAGTTTTCGGGAGCTATCTGCTCGAAATCTGTGACAATGGCGCCGAGGCTCGGCTCCGGCGACGAATCCAGCTTCAAGTTCCTTCTCTTTCTGGTCGAGAATTACCACCTCATCGCCGTGCTTGTCCACTTTGGTGAGAGAAATGAATGGCGGTGGAGAAGGGCTCGCGGCTTCGGCGACGTCTGGAGCGGCGATGGCGCCACTCGACTGGATGTTTCTCAAGTTTCTGGAGAACAGACCGCCGGCGAGGAAGTTCAGGAAGGATACCCAATAGGAGCTATGATGACACGACAGCAAGGTTTTTCTTATTTTGGTTGGGGACTATGGTACTCTGATATTGAAGCCCAGCTTTCCTTTTGGTTGGAGAACACATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

362

Amino Acids

39.91

Weight (kDa)

9.11

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	894
AccB1I	GGYRCC	3 cut(s)	257, 751, 908
AccBSI	CCGCTC	1 cut(s)	900
AccII	CGCG	1 cut(s)	879
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	7 cut(s)	150, 153, 156, 862, 879, 900, 951
AclWI	GGATC	3 cut(s)	172, 531, 544
AcsI	RAATTY	2 cut(s)	274, 547
AcuI	CTGAAG	2 cut(s)	171, 551
AcyI	GRCGYC	3 cut(s)	752, 891, 909
AfaI	GTAC	1 cut(s)	1040
AfiI	CCNNNNNNNGG	2 cut(s)	146, 761
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	4 cut(s)	103, 124, 787, 1052
AleI	CACNNNNGTG	1 cut(s)	843
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	172, 531, 544
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	207
Aor13HI	TCCGGA	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	274, 547
AspLEI	GCGC	2 cut(s)	754, 911
AsuHPI	GGTGA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	207
AxyI	CCTNAGG	2 cut(s)	93, 555
BaeGI	GKGCMC	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	536
BanI	GGYRCC	3 cut(s)	257, 751, 908
BanII	GRGCYC	3 cut(s)	175, 208, 877
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	2 cut(s)	194, 899
BceAI	ACGGC	3 cut(s)	325, 542, 812
BciVI	GTATCC	1 cut(s)	968
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	2 cut(s)	755, 912
BfuI	GTATCC	1 cut(s)	968
BisI	GCNGC	5 cut(s)	108, 151, 154, 880, 901
BlsI	GCNGC	5 cut(s)	109, 152, 155, 881, 902
BmeT110I	CYCGRG	1 cut(s)	207
BmiI	GGNNCC	6 cut(s)	174, 259, 538, 753, 766, 910
BmsI	GCATC	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	859, 891
BpmI	CTGGAG	3 cut(s)	159, 916, 960
BpuEI	CTTGAG	1 cut(s)	915
BsaHI	GRCGYC	3 cut(s)	752, 891, 909
BsaJI	CCNNGG	1 cut(s)	755
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 761
Bse118I	RCCGGY	1 cut(s)	953
Bse1I	ACTGG	4 cut(s)	20, 151, 292, 924
Bse21I	CCTNAGG	2 cut(s)	93, 555
Bse3DI	GCAATG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	755
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	2 cut(s)	146, 761
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	4 cut(s)	107, 282, 474, 569
BseNI	ACTGG	4 cut(s)	20, 151, 292, 924
BseRI	GAGGAG	3 cut(s)	675, 704, 707
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	1056
Bsh1236I	CGCG	1 cut(s)	879
BshNI	GGYRCC	3 cut(s)	257, 751, 908
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	51, 768, 954
BslFI	GGGAC	2 cut(s)	8, 1044
BslI	CCNNNNNNNGG	2 cut(s)	146, 761
BsmFI	GGGAC	2 cut(s)	8, 1044
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	5 cut(s)	36, 175, 208, 262, 877
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	164, 341, 536
BspACI	CCGC	7 cut(s)	150, 153, 156, 862, 879, 900, 951
BspCNI	CTCAG	4 cut(s)	106, 281, 475, 568
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	879
BspLI	GGNNCC	6 cut(s)	174, 259, 538, 753, 766, 910
BspPI	GGATC	3 cut(s)	172, 531, 544
BspT107I	GGYRCC	3 cut(s)	257, 751, 908
BsrBI	CCGCTC	1 cut(s)	900
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	953
BsrI	ACTGG	4 cut(s)	20, 151, 292, 924
BssAI	RCCGGY	1 cut(s)	953
BssECI	CCNNGG	1 cut(s)	755
BssMI	GATC	3 cut(s)	164, 341, 536
BssNI	GRCGYC	3 cut(s)	752, 891, 909
BstACI	GRCGYC	3 cut(s)	752, 891, 909
BstC8I	GCNNGC	2 cut(s)	877, 955
BstDEI	CTNAG	4 cut(s)	93, 268, 483, 555
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	1 cut(s)	879
BstH2I	RGCGCY	2 cut(s)	755, 912
BstHHI	GCGC	2 cut(s)	754, 911
BstKTI	GATC	3 cut(s)	167, 344, 539
BstMBI	GATC	3 cut(s)	164, 341, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	885, 906
BstNSI	RCATGY	2 cut(s)	457, 1086
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	536
BstXI	CCANNNNNNTGG	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	536
Bsu36I	CCTNAGG	2 cut(s)	93, 555
BsuI	GTATCC	1 cut(s)	968
BtgZI	GCGATG	3 cut(s)	658, 808, 918
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 144
Cac8I	GCNNGC	2 cut(s)	877, 955
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	2 cut(s)	754, 911
Cfr10I	RCCGGY	1 cut(s)	953
Csp6I	GTAC	1 cut(s)	1039
CviAII	CATG	4 cut(s)	319, 454, 608, 1083
CviQI	GTAC	1 cut(s)	1039
DdeI	CTNAG	4 cut(s)	93, 268, 483, 555
DinI	GGCGCC	2 cut(s)	753, 910
DpnI	GATC	3 cut(s)	166, 343, 538
DpnII	GATC	3 cut(s)	164, 341, 536
Eco24I	GRGCYC	3 cut(s)	175, 208, 877
Eco57I	CTGAAG	2 cut(s)	171, 551
Eco81I	CCTNAGG	2 cut(s)	93, 555
Eco88I	CYCGRG	1 cut(s)	207
EcoT38I	GRGCYC	3 cut(s)	175, 208, 877
EgeI	GGCGCC	2 cut(s)	753, 910
EheI	GGCGCC	2 cut(s)	753, 910
FaeI	CATG	4 cut(s)	322, 457, 611, 1086
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FaqI	GGGAC	2 cut(s)	8, 1044
FatI	CATG	4 cut(s)	318, 453, 607, 1082
Fnu4HI	GCNGC	5 cut(s)	108, 151, 154, 880, 901
FokI	GGATG	1 cut(s)	935
FriOI	GRGCYC	3 cut(s)	175, 208, 877
Fsp4HI	GCNGC	5 cut(s)	108, 151, 154, 880, 901
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	2 cut(s)	753, 910
GluI	GCNGC	5 cut(s)	108, 151, 154, 880, 901
GsaI	CCCAGC	1 cut(s)	1060
GsuI	CTGGAG	3 cut(s)	159, 916, 960
HaeII	RGCGCY	2 cut(s)	755, 912
HapII	CCGG	3 cut(s)	51, 768, 954
HhaI	GCGC	2 cut(s)	754, 911
Hin1I	GRCGYC	3 cut(s)	752, 891, 909
Hin1II	CATG	4 cut(s)	322, 457, 611, 1086
Hin6I	GCGC	2 cut(s)	752, 909
HinP1I	GCGC	2 cut(s)	752, 909
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	3 cut(s)	427, 496, 776
HpaII	CCGG	3 cut(s)	51, 768, 954
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	6 cut(s)	346, 484, 495, 541, 566, 1045
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	3 cut(s)	688, 776, 893
HpyAV	CCTTC	5 cut(s)	526, 590, 803, 864, 965
HpyCH4IV	ACGT	2 cut(s)	220, 891
HpyCH4V	TGCA	2 cut(s)	110, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	885, 906
HpyF3I	CTNAG	4 cut(s)	93, 268, 483, 555
HpySE526I	ACGT	2 cut(s)	220, 891
Hsp92I	GRCGYC	3 cut(s)	752, 891, 909
Hsp92II	CATG	4 cut(s)	322, 457, 611, 1086
HspAI	GCGC	2 cut(s)	752, 909
KasI	GGCGCC	2 cut(s)	751, 908
Kpn2I	TCCGGA	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	953
KroNI	GCCGGC	1 cut(s)	955
Kzo9I	GATC	3 cut(s)	164, 341, 536
LmnI	GCTCC	7 cut(s)	31, 178, 293, 722, 770, 897, 986
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	220, 891
MaeIII	GTNAC	5 cut(s)	363, 390, 509, 668, 742
MalI	GATC	3 cut(s)	166, 343, 538
MbiI	CCGCTC	1 cut(s)	900
MboI	GATC	3 cut(s)	164, 341, 536
MboII	GAAGA	3 cut(s)	345, 351, 611
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	5 cut(s)	36, 175, 208, 262, 877
MluCI	AATT	6 cut(s)	274, 325, 462, 547, 624, 811
Mly113I	GGCGCC	2 cut(s)	752, 909
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	2 cut(s)	564, 1053
MreI	CGCCGGCG	1 cut(s)	953
MroI	TCCGGA	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	953
MseI	TTAA	4 cut(s)	335, 372, 630, 704
MslI	CAYNNNNRTG	3 cut(s)	677, 827, 843
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	3 cut(s)	51, 768, 954
MunI	CAATTG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	2 cut(s)	885, 906
NaeI	GCCGGC	1 cut(s)	955
NarI	GGCGCC	2 cut(s)	752, 909
NdeII	GATC	3 cut(s)	164, 341, 536
NgoMIV	GCCGGC	1 cut(s)	953
NlaIII	CATG	4 cut(s)	322, 457, 611, 1086
NlaIV	GGNNCC	6 cut(s)	174, 259, 538, 753, 766, 910
NmeAIII	GCCGAG	2 cut(s)	741, 780
NmuCI	GTSAC	5 cut(s)	363, 390, 509, 668, 742
NspI	RCATGY	2 cut(s)	457, 1086
OliI	CACNNNNGTG	1 cut(s)	843
PaeR7I	CTCGAG	1 cut(s)	207
PciI	ACATGT	1 cut(s)	1082
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PdiI	GCCGGC	1 cut(s)	955
PfeI	GAWTC	2 cut(s)	496, 776
PkrI	GCNGC	5 cut(s)	109, 152, 155, 881, 902
PleI	GAGTC	1 cut(s)	435
PluTI	GGCGCC	2 cut(s)	755, 912
PpsI	GAGTC	1 cut(s)	435
PscI	ACATGT	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	1056
PspN4I	GGNNCC	6 cut(s)	174, 259, 538, 753, 766, 910
PspXI	VCTCGAGB	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	1040
RsaNI	GTAC	1 cut(s)	1039
RseI	CAYNNNNRTG	3 cut(s)	677, 827, 843
SaqAI	TTAA	4 cut(s)	335, 372, 630, 704
SatI	GCNGC	5 cut(s)	108, 151, 154, 880, 901
Sau3AI	GATC	3 cut(s)	164, 341, 536
SchI	GAGTC	1 cut(s)	436
SduI	GDGCHC	5 cut(s)	36, 175, 208, 262, 877
SfaNI	GCATC	1 cut(s)	337
SfoI	GGCGCC	2 cut(s)	753, 910
Sfr274I	CTCGAG	1 cut(s)	207
SgrAI	CRCCGGYG	1 cut(s)	953
SlaI	CTCGAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	3 cut(s)	677, 827, 843
SmlI	CTYRAG	2 cut(s)	207, 930
SmoI	CTYRAG	2 cut(s)	207, 930
Sse9I	AATT	6 cut(s)	274, 325, 462, 547, 624, 811
SsiI	CCGC	7 cut(s)	150, 153, 156, 862, 879, 900, 951
SspDI	GGCGCC	2 cut(s)	751, 908
SspMI	CTAG	1 cut(s)	699
TaiI	ACGT	2 cut(s)	223, 894
TaqI	TCGA	6 cut(s)	208, 642, 658, 734, 807, 916
TasI	AATT	6 cut(s)	274, 325, 462, 547, 624, 811
TauI	GCSGC	4 cut(s)	153, 156, 882, 903
TfiI	GAWTC	2 cut(s)	496, 776
Tru1I	TTAA	4 cut(s)	335, 372, 630, 704
Tru9I	TTAA	4 cut(s)	335, 372, 630, 704
TscAI	CASTG	2 cut(s)	41, 151
TseFI	GTSAC	5 cut(s)	363, 390, 509, 668, 742
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	5 cut(s)	363, 390, 509, 668, 742
TspDTI	ATGAA	5 cut(s)	76, 335, 560, 593, 870
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	41, 151
XapI	RAATTY	2 cut(s)	274, 547
XceI	RCATGY	2 cut(s)	457, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	207
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.