Prupe.4G196700_v2.0.a1
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001331
Physical Location & Seq
Forward (+)
12007842 .. 12009286
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G196700.1

Sequence Viewer

Length: 339 bp
ATGGAGAAGGTTGCTGAAGAGACGCAGAGGAAGAGGAAAGCTCCTAAGGAGGTGGGCAATGGCGAAAATGGTGGTGGAGCTGAAGAGGATCAACATAGGCAAAAAATAAGTAGGCAAAAGAGTGACGGAATTCTGGAAAATGGGGATCAGGATACTGCAGGTGAGCTGGTTGAAGGATGGTTTGGCGGTGGTCTGAGTGTTGGTGAAGAAATTGCTCGCCTTTTTGGTCAAGTGAGTGGTAGGAGTGTTGGCCTTGATATTGATGGCATAAATCCCCAAAATCCTTGCAGCAATTTCGGCGTCTTGGCCGAAGAACCGGTACTTGTACTTGGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

113

Amino Acids

11.85

Weight (kDa)

4.62

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 96, 153
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 36, 102
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 321, 327
AgeI ACCGGT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 3 cut(s) 41, 80, 166
AluI AGCT 3 cut(s) 41, 80, 166
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 2 cut(s) 96, 153
AoxI GGCC 2 cut(s) 250, 306
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 173, 215
AxyI CCTNAGG 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbvI GCAGC 1 cut(s) 300
BccI CCATC 2 cut(s) 171, 257
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciVI GTATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BsaHI GRCGYC 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 64
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 252, 308
BshTI ACCGGT 1 cut(s) 316
BsiSI CCGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 2 cut(s) 252, 308
Bsp143I GATC 2 cut(s) 88, 145
BspACI CCGC 1 cut(s) 186
BspANI GGCC 2 cut(s) 252, 308
BspCNI CTCAG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 96, 153
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssMI GATC 2 cut(s) 88, 145
BssNI GRCGYC 1 cut(s) 300
Bst6I CTCTTC 3 cut(s) 12, 26, 78
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 45, 194
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 2 cut(s) 91, 148
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 88, 145
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 45
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 252, 308
BtsCI GGATG 1 cut(s) 182
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 316
CseI GACGC 2 cut(s) 31, 289
Csp6I GTAC 2 cut(s) 320, 326
CspAI ACCGGT 1 cut(s) 316
CviJI RGCY 5 cut(s) 41, 80, 166, 252, 308
CviKI_1 RGCY 5 cut(s) 41, 80, 166, 252, 308
CviQI GTAC 2 cut(s) 320, 326
DdeI CTNAG 2 cut(s) 45, 194
DpnI GATC 2 cut(s) 90, 147
DpnII GATC 2 cut(s) 88, 145
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 12, 26, 78
EarI CTCTTC 3 cut(s) 12, 26, 78
Eco57I CTGAAG 2 cut(s) 36, 102
Eco81I CCTNAGG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 2 cut(s) 96, 269
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 2 cut(s) 252, 308
HapII CCGG 1 cut(s) 317
HgaI GACGC 2 cut(s) 31, 289
Hin1I GRCGYC 1 cut(s) 300
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 173, 215
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 134, 149
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 158, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 2 cut(s) 45, 194
Hsp92I GRCGYC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 88, 145
LmnI GCTCC 2 cut(s) 46, 77
LpnPI CCDG 5 cut(s) 119, 134, 144, 152, 330
Lsp1109I GCAGC 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 122
MalI GATC 2 cut(s) 90, 147
MboI GATC 2 cut(s) 88, 145
MboII GAAGA 5 cut(s) 29, 43, 95, 218, 323
MluCI AATT 3 cut(s) 129, 210, 292
MnlI CCTC 5 cut(s) 21, 27, 43, 79, 326
MspI CCGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 2 cut(s) 88, 145
NmuCI GTSAC 1 cut(s) 122
PaqCI CACCTGC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 316
PkrI GCNGC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 2 cut(s) 321, 327
RsaNI GTAC 2 cut(s) 320, 326
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 2 cut(s) 88, 145
SetI ASST 6 cut(s) 12, 43, 54, 82, 163, 168
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 3 cut(s) 129, 210, 292
SsiI CCGC 1 cut(s) 186
TasI AATT 3 cut(s) 129, 210, 292
TatI WGTACW 1 cut(s) 325
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 141
XapI RAATTY 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.