Rh2CG157800
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001331
Physical Location & Seq
Forward (+)
13712931 .. 13713961
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG157800.1

Sequence Viewer

Length: 459 bp
ATGAATCACAGTGACTTCCGTGCTCGGCAATTGAAGAACTCAAAACATACTGGGCAAAAAGTCTGTAAGAGACCTAGAGGGAGACCTAGGAAGTTTAGCAACCTACAGGCGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTATGGTGCCACCAGTGCTTACGGAATGACAGAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCTCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAACTGCAACTGCAGAATATGCCTCAAGGAGTATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAACTCTGCCTCTCCTTAAGCATATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

152

Amino Acids

17.98

Weight (kDa)

9.4

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 54 - 120 1.3e-08 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 2 cut(s) 174, 267
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 2 cut(s) 125, 443
AgsI TTSAA 2 cut(s) 34, 455
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 64, 76
Ama87I CYCGRG 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 267
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 86
BanI GGYRCC 2 cut(s) 174, 267
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 64, 76
BfaI CTAG 2 cut(s) 75, 87
BfmI CTRYAG 2 cut(s) 104, 331
BfrI CTTAAG 2 cut(s) 125, 443
BlnI CCTAGG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 122, 176, 269
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 329
BsaI GGTCTC 2 cut(s) 64, 76
BsaJI CCNNGG 3 cut(s) 86, 116, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 55, 181
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 86, 116, 117
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 55, 181
BseYI CCCAGC 1 cut(s) 368
BshNI GGYRCC 2 cut(s) 174, 267
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 64, 76
BsmFI GGGAC 1 cut(s) 134
Bso31I GGTCTC 2 cut(s) 64, 76
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 122, 176, 269
BspMAI CTGCAG 1 cut(s) 335
BspT107I GGYRCC 2 cut(s) 174, 267
BspTI CTTAAG 2 cut(s) 125, 443
BspTNI GGTCTC 2 cut(s) 64, 76
BsrI ACTGG 2 cut(s) 55, 181
BssECI CCNNGG 3 cut(s) 86, 116, 117
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 11
BstAFI CTTAAG 2 cut(s) 125, 443
BstAPI GCANNNNNTGC 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 64, 76
BstMWI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 104, 331
BstV2I GAAGAC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 16, 188
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 374
CviJI RGCY 1 cut(s) 368
CviKI_1 RGCY 1 cut(s) 368
CviQI GTAC 1 cut(s) 268
DraI TTTAAA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 86
Eco31I GGTCTC 2 cut(s) 64, 76
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 377
FaiI YATR 7 cut(s) 48, 172, 249, 293, 340, 375, 450
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 373
FokI GGATG 1 cut(s) 99
FspBI CTAG 2 cut(s) 75, 87
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 4
Hpy188III TCNNGA 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 5 cut(s) 228, 260, 327, 333, 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 271
LpnPI CCDG 7 cut(s) 36, 92, 103, 116, 130, 194, 354
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 75, 87
MaeIII GTNAC 1 cut(s) 11
MboII GAAGA 3 cut(s) 46, 289, 389
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 3 cut(s) 29, 223, 398
MnlI CCTC 5 cut(s) 71, 280, 281, 353, 447
MseI TTAA 4 cut(s) 126, 221, 396, 444
MspCI CTTAAG 2 cut(s) 125, 443
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 3 cut(s) 122, 176, 269
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 272
PasI CCCWGGG 1 cut(s) 117
PfeI GAWTC 1 cut(s) 4
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 122, 176, 269
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 335
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 4 cut(s) 126, 221, 396, 444
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 76, 88, 105, 126, 273
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 104, 331
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 121
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 4 cut(s) 125, 272, 344, 443
SmoI CTYRAG 4 cut(s) 125, 272, 344, 443
Sse9I AATT 3 cut(s) 29, 223, 398
SspI AATATT 1 cut(s) 394
SspMI CTAG 2 cut(s) 75, 87
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 29, 223, 398
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 4 cut(s) 126, 221, 396, 444
Tru9I TTAA 4 cut(s) 126, 221, 396, 444
TscAI CASTG 2 cut(s) 16, 188
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 17, 390
TspGWI ACGGA 2 cut(s) 8, 205
TspRI CASTG 2 cut(s) 16, 188
Vha464I CTTAAG 2 cut(s) 125, 443
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 2 cut(s) 75, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.