Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001331

Physical Location & Seq

Genomic Coordinates Reverse (-)

63801999 .. 63802750

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCAGGTCGAGGAACATACATCATCTTTGGTGGGAATGCAGAATTTATGGCGAGGTTGAAGCTGCGTGAGATGCTTATGCCTAGGGTTGTAAAACTAACAGAAGGAGGTTATGTCTCAGTGAAAAAACTTCCGCCGAAAAAGTCCTGGAAGGTTAATGAAAAGCTATTTCCATGCAAACTGACCAATGAAAAGACCAAGTTAGCTGAGGAAGCTGTGAATTTAGCTGTTGAAACTTGTGGTCAGAGATCATTGATGGAGCTTGAAGCTAGCAGAGGAGCGTCTTTCTTATTCTTGCGAAAAGGTGAAACTTTGAAACTTGTCAGAAATTTACATGTTATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

9.96

Isoelectric Point (pI)

21.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990 AT4G00990
fragaria_vesca	FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570
malus_domestica	MD01G1218500.v1.1
prunus_persica	Prupe.2G309900_v2.0.a1 Prupe.2G309900_v2.0.a1 Prupe.4G196700_v2.0.a1
pyrus_communis	pycom01g22840
rosa_chinensis	RchiOBHm_Chr1g0380571 RchiOBHm_Chr2g0102041
rosa_laevigata	RLG00000001517 RLG00000003267 RLG00000004936 RLG00000008941 RLG00000021775 RLG00000023713 RLG00000026284 RLG00000035166
rosa_multiflora	Rmu_co8145792.1_g000001 Rmu_co8424905.1_g000001 Rmu_co8458399.1_g000001 Rmu_sc0002486.1_g000005 Rmu_sc0003730.1_g000009 Rmu_sc0011739.1_g000001 Rmu_ssc0000015.1_g000010
rosa_roxburghii	Rroxscaffold_2G00097880 Rroxscaffold_4G00279180 Rroxscaffold_4G00279190 Rroxscaffold_6G00388540
rosa_rugosa	Rorug01G0422600
rosa_samantha	Rh1AG447100 Rh1BG202200 Rh1BG402400 Rh1CG416600 Rh1CG416700 Rh1CG416800 Rh1CG416900 Rh1DG432600 Rh2CG116900 Rh2CG157700 Rh2CG157800 Rh2CG241900 Rh4BG088800 Rh4BG088900 Rh5BG519200 Rh5CG542800 Rh5DG400800
rosa_wichuraiana	Rw1G038890 Rw5G046210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AcsI	RAATTY	3 cut(s)	44, 220, 328
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	61, 233, 266, 316
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	64, 166, 206, 215, 227, 262, 269
AluI	AGCT	7 cut(s)	64, 166, 206, 215, 227, 262, 269
Alw26I	GTCTC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	3 cut(s)	44, 220, 328
AspA2I	CCTAGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	317
AsuNHI	GCTAGC	1 cut(s)	269
AvrII	CCTAGG	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	84, 270
BisI	GCNGC	1 cut(s)	65
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	63
BmtI	GCTAGC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	132, 198
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	131, 199
BspOI	GCTAGC	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	2 cut(s)	118, 207
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 212
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	271
CseI	GACGC	1 cut(s)	270
CviAII	CATG	2 cut(s)	174, 335
CviJI	RGCY	7 cut(s)	64, 166, 206, 215, 227, 262, 269
CviKI_1	RGCY	7 cut(s)	64, 166, 206, 215, 227, 262, 269
DdeI	CTNAG	2 cut(s)	118, 207
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	2 cut(s)	177, 338
FaiI	YATR	6 cut(s)	19, 50, 80, 114, 175, 336
FatI	CATG	2 cut(s)	173, 334
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	84, 270
GluI	GCNGC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	177, 338
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	246, 326, 347
HpyAV	CCTTC	2 cut(s)	98, 145
HpyCH4V	TGCA	2 cut(s)	41, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 212
HpyF3I	CTNAG	2 cut(s)	118, 207
Hsp92II	CATG	2 cut(s)	177, 338
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	259, 278
LpnPI	CCDG	2 cut(s)	133, 160
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	2 cut(s)	84, 270
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MluCI	AATT	3 cut(s)	44, 220, 328
MnlI	CCTC	5 cut(s)	5, 48, 101, 202, 269
MseI	TTAA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	73, 212
NdeII	GATC	1 cut(s)	248
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	177, 338
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	66
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	63
Sse9I	AATT	3 cut(s)	44, 220, 328
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	84, 270
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	83
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	44, 220, 328
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	174, 204
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	3 cut(s)	44, 220, 328
XceI	RCATGY	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	84, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.