RLG00000008941
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001331
Physical Location & Seq
Forward (+)
43250778 .. 43253585
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008941

Sequence Viewer

Length: 957 bp
ATGAATCACGGTGAATTCCGTACTCAGCAATTAAAGAACTCAGAAGATACTGAGAAAAAATTTCATAAGAGGCTTAGAGGTAAGAGGCCTAGAGGGAGACCCAGGATGTTTAACAACCTACAAATGAATCACAGTGACTTCCGTGCTCGGCAATTGAAAAACTCAGAACATACTGGGCAAAAAGTCTGTAAGAGACCTAAAGGGAGACCCAGGAAGTTTAGCAACCTACAGGTGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTATGGTGCCACCAGTGCTTACAGAATGACAGAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCCTGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAACTGCAACTGCAGAATATGCCTCAAGGAGGATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAAGTCTGCCTCTCCTTAAGCATATTCAACAGGAGCAGAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGATGTGCAATTGACAGAAGAGGACCTCACGAGCTCTATACTAGAGGATGGTGATCGAGTTTACTGGATGGAAGAGGTTGAAAACCATTTTAGTCTTATTTTCCTTTACAGGTATGAGAAAGTTGGGTACTTGGATACTGATGTTGGGCAACTTGAGTTTAGTCCTCCTAGAGTGCTGATCAACATGGTTAAGCCTTTCACAAAGGATGATATGTGCCATTGTTTTGGTTGTCTGTTTCTCATGAGCAAGTTCATAATAGGAAGTTGCGATACAAAGCTCCTAGAACTGCTGGATTGTAAAGATTGCTCAACTCTTGGGCATTGTATGCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

319

Amino Acids

37.45

Weight (kDa)

8.4

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 95 - 164 6.1e-09 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 297, 390
AccI GTMKAC 1 cut(s) 616
AcsI RAATTY 2 cut(s) 14, 59
AfaI GTAC 3 cut(s) 22, 392, 749
AfiI CCNNNNNNNGG 2 cut(s) 253, 472
AflII CTTAAG 2 cut(s) 248, 566
AgsI TTSAA 3 cut(s) 157, 578, 701
AjnI CCWGG 3 cut(s) 101, 209, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 3 cut(s) 612, 654, 898
AluI AGCT 3 cut(s) 612, 654, 898
Alw21I GWGCWC 2 cut(s) 148, 656
Alw26I GTCTC 3 cut(s) 91, 187, 199
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 14, 59
Asp718I GGTACC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 244, 643
AsuHPI GGTGA 2 cut(s) 23, 683
AvaII GGWCC 2 cut(s) 244, 643
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BanI GGYRCC 2 cut(s) 297, 390
BanII GRGCYC 1 cut(s) 656
BarI GAAGNNNNNNTAC 2 cut(s) 874, 906
BauI CACGAG 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 148, 656
BccI CCATC 3 cut(s) 481, 662, 682
BciT130I CCWGG 3 cut(s) 103, 211, 241
BciVI GTATCC 1 cut(s) 748
BclI TGATCA 1 cut(s) 798
BcoDI GTCTC 3 cut(s) 91, 187, 199
BfaI CTAG 4 cut(s) 90, 662, 789, 902
BfmI CTRYAG 2 cut(s) 227, 454
BfrI CTTAAG 2 cut(s) 248, 566
BfuI GTATCC 1 cut(s) 748
BglII AGATCT 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 103, 211, 241
Bme18I GGWCC 2 cut(s) 244, 643
BmgT120I GGNCC 2 cut(s) 244, 643
BmiI GGNNCC 3 cut(s) 245, 299, 392
BmrFI CCNGG 3 cut(s) 103, 211, 241
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 452, 794
BsaAI YACGTR 1 cut(s) 620
BsaBI GATNNNNATC 1 cut(s) 672
BsaI GGTCTC 3 cut(s) 91, 187, 199
BsaJI CCNNGG 4 cut(s) 101, 209, 239, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 472
Bse1I ACTGG 3 cut(s) 178, 304, 689
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 3 cut(s) 103, 211, 241
BseDI CCNNGG 4 cut(s) 101, 209, 239, 240
BseGI GGATG 5 cut(s) 111, 235, 673, 693, 832
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 253, 472
BseMII CTCAG 5 cut(s) 38, 42, 54, 177, 387
BseNI ACTGG 3 cut(s) 178, 304, 689
BseYI CCCAGC 1 cut(s) 491
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 2 cut(s) 297, 390
BsiHKAI GWGCWC 2 cut(s) 148, 656
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 253, 472
BsmAI GTCTC 3 cut(s) 91, 187, 199
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 88
Bso31I GGTCTC 3 cut(s) 91, 187, 199
Bsp1286I GDGCHC 2 cut(s) 148, 656
Bsp143I GATC 3 cut(s) 590, 673, 798
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 5 cut(s) 37, 43, 53, 176, 388
BspHI TCATGA 1 cut(s) 861
BspLI GGNNCC 3 cut(s) 245, 299, 392
BspMAI CTGCAG 1 cut(s) 458
BspT107I GGYRCC 2 cut(s) 297, 390
BspTI CTTAAG 2 cut(s) 248, 566
BspTNI GGTCTC 3 cut(s) 91, 187, 199
BsrI ACTGG 3 cut(s) 178, 304, 689
BssECI CCNNGG 4 cut(s) 101, 209, 239, 240
BssMI GATC 3 cut(s) 590, 673, 798
BssNAI GTATAC 1 cut(s) 617
BssSI CACGAG 1 cut(s) 649
Bst1107I GTATAC 1 cut(s) 617
Bst2BI CACGAG 1 cut(s) 649
Bst2UI CCWGG 3 cut(s) 103, 211, 241
Bst4CI ACNGT 2 cut(s) 11, 134
Bst6I CTCTTC 2 cut(s) 633, 687
BstAFI CTTAAG 2 cut(s) 248, 566
BstAPI GCANNNNNTGC 2 cut(s) 462, 946
BstBAI YACGTR 1 cut(s) 620
BstDEI CTNAG 6 cut(s) 24, 40, 51, 74, 163, 396
BstENI CCTNNNNNAGG 2 cut(s) 251, 470
BstF5I GGATG 5 cut(s) 111, 235, 673, 693, 832
BstKTI GATC 3 cut(s) 593, 676, 801
BstMAI GTCTC 3 cut(s) 91, 187, 199
BstMBI GATC 3 cut(s) 590, 673, 798
BstMWI GCNNNNNNNGC 5 cut(s) 306, 375, 462, 541, 946
BstNI CCWGG 3 cut(s) 103, 211, 241
BstSCI CCNGG 3 cut(s) 101, 209, 239
BstSFI CTRYAG 2 cut(s) 227, 454
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 590
BstZ17I GTATAC 1 cut(s) 617
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 5 cut(s) 111, 235, 673, 693, 832
BtsIMutI CAGTG 2 cut(s) 139, 311
CciI TCATGA 1 cut(s) 861
Cfr13I GGNCC 2 cut(s) 244, 643
Csp6I GTAC 3 cut(s) 21, 391, 748
CviAII CATG 3 cut(s) 497, 805, 862
CviJI RGCY 7 cut(s) 73, 88, 491, 612, 654, 814, 898
CviKI_1 RGCY 7 cut(s) 73, 88, 491, 612, 654, 814, 898
CviQI GTAC 3 cut(s) 21, 391, 748
DdeI CTNAG 6 cut(s) 24, 40, 51, 74, 163, 396
DpnI GATC 3 cut(s) 592, 675, 800
DpnII GATC 3 cut(s) 590, 673, 798
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 633, 687
EarI CTCTTC 2 cut(s) 633, 687
Ecl136II GAGCTC 1 cut(s) 654
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 656
Eco31I GGTCTC 3 cut(s) 91, 187, 199
Eco47I GGWCC 2 cut(s) 244, 643
Eco53kI GAGCTC 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 654
EcoNI CCTNNNNNAGG 2 cut(s) 251, 470
EcoO109I RGGNCCY 2 cut(s) 244, 643
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 3 cut(s) 101, 209, 239
EcoT38I GRGCYC 1 cut(s) 656
FaeI CATG 3 cut(s) 500, 808, 865
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 496, 804, 861
FbaI TGATCA 1 cut(s) 798
FblI GTMKAC 1 cut(s) 616
FokI GGATG 5 cut(s) 118, 222, 680, 700, 839
FriOI GRGCYC 1 cut(s) 656
FspBI CTAG 4 cut(s) 90, 662, 789, 902
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 3 cut(s) 500, 808, 865
HinfI GANTC 2 cut(s) 4, 127
HphI GGTGA 2 cut(s) 23, 683
Hpy166II GTNNAC 2 cut(s) 617, 682
Hpy188I TCNGA 3 cut(s) 43, 166, 595
Hpy188III TCNNGA 2 cut(s) 649, 862
Hpy8I GTNNAC 2 cut(s) 617, 682
HpyCH4III ACNGT 2 cut(s) 11, 134
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 7 cut(s) 235, 351, 383, 450, 456, 549, 628
HpyF10VI GCNNNNNNNGC 5 cut(s) 306, 375, 462, 541, 946
HpyF3I CTNAG 6 cut(s) 24, 40, 51, 74, 163, 396
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 3 cut(s) 500, 808, 865
KpnI GGTACC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 798
Kzo9I GATC 3 cut(s) 590, 673, 798
LmnI GCTCC 2 cut(s) 583, 903
LweI GCATC 1 cut(s) 244
MaeI CTAG 4 cut(s) 90, 662, 789, 902
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 592, 675, 800
MboI GATC 3 cut(s) 590, 673, 798
MboII GAAGA 5 cut(s) 56, 412, 512, 650, 704
MfeI CAATTG 2 cut(s) 152, 629
MflI RGATCY 1 cut(s) 590
MhlI GDGCHC 2 cut(s) 148, 656
MluCI AATT 8 cut(s) 14, 29, 59, 152, 346, 521, 596, 629
MseI TTAA 7 cut(s) 32, 111, 249, 344, 519, 567, 810
MspCI CTTAAG 2 cut(s) 248, 566
MspR9I CCNGG 3 cut(s) 103, 211, 241
MunI CAATTG 2 cut(s) 152, 629
MvaI CCWGG 3 cut(s) 103, 211, 241
MwoI GCNNNNNNNGC 5 cut(s) 306, 375, 462, 541, 946
NdeII GATC 3 cut(s) 590, 673, 798
NlaIII CATG 3 cut(s) 500, 808, 865
NlaIV GGNNCC 3 cut(s) 245, 299, 392
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 1 cut(s) 861
PasI CCCWGGG 1 cut(s) 240
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 2 cut(s) 4, 127
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 2 cut(s) 244, 643
Psp124BI GAGCTC 1 cut(s) 656
Psp5II RGGWCCY 2 cut(s) 244, 643
Psp6I CCWGG 3 cut(s) 101, 209, 239
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 3 cut(s) 101, 209, 239
PspN4I GGNNCC 3 cut(s) 245, 299, 392
PspPI GGNCC 2 cut(s) 244, 643
PspPPI RGGWCCY 2 cut(s) 244, 643
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 3 cut(s) 22, 392, 749
RsaNI GTAC 3 cut(s) 21, 391, 748
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 7 cut(s) 32, 111, 249, 344, 519, 567, 810
Sau3AI GATC 3 cut(s) 590, 673, 798
Sau96I GGNCC 2 cut(s) 244, 643
ScrFI CCNGG 3 cut(s) 103, 211, 241
SduI GDGCHC 2 cut(s) 148, 656
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 2 cut(s) 227, 454
SinI GGWCC 2 cut(s) 244, 643
SmlI CTYRAG 4 cut(s) 248, 467, 566, 773
SmoI CTYRAG 4 cut(s) 248, 467, 566, 773
Sse9I AATT 8 cut(s) 14, 29, 59, 152, 346, 521, 596, 629
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 517
SspMI CTAG 4 cut(s) 90, 662, 789, 902
SstI GAGCTC 1 cut(s) 656
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 101, 209, 239
TaaI ACNGT 2 cut(s) 11, 134
TaiI ACGT 1 cut(s) 622
TaqI TCGA 1 cut(s) 676
TasI AATT 8 cut(s) 14, 29, 59, 152, 346, 521, 596, 629
TfiI GAWTC 2 cut(s) 4, 127
Tru1I TTAA 7 cut(s) 32, 111, 249, 344, 519, 567, 810
Tru9I TTAA 7 cut(s) 32, 111, 249, 344, 519, 567, 810
TscAI CASTG 2 cut(s) 139, 311
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 5 cut(s) 17, 53, 140, 513, 862
TspGWI ACGGA 2 cut(s) 8, 131
TspRI CASTG 2 cut(s) 139, 311
Vha464I CTTAAG 2 cut(s) 248, 566
VpaK11BI GGWCC 2 cut(s) 244, 643
XagI CCTNNNNNAGG 2 cut(s) 251, 470
XapI RAATTY 2 cut(s) 14, 59
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 4 cut(s) 90, 662, 789, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.