Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001331

Physical Location & Seq

Genomic Coordinates Forward (+)

16726663 .. 16727825

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATAAGAAAGGATAAGTTTGATGTAGTTTTCAGGGAAACTAAAGTGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGCAAGAAGTTGGCATTCCCCATAAGGTCGAGGAACAATCATAATCCTTGGTGGGACCTTGAATTTATGGTGAGGTTGCGTGAGATGCTTATGCCAAGAGTTGTAAAACTAACTGAAGGAGGTTATGTCTCAGTGAAAAAACTTCTGCTGAAAAAGTCCTGGAAGGTTAATGAAAAGCTATTTCCATGCAAACTGTCCAATGAAAAGACCAAGTTAGCTGAGGAAGTTGTGAATTTAGCTGCTGAAACTTGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

112

Amino Acids

13.09

Weight (kDa)

9.92

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990 AT4G00990
fragaria_vesca	FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570
malus_domestica	MD01G1218500.v1.1
prunus_persica	Prupe.2G309900_v2.0.a1 Prupe.2G309900_v2.0.a1 Prupe.4G196700_v2.0.a1
pyrus_communis	pycom01g22840
rosa_chinensis	RchiOBHm_Chr1g0380571 RchiOBHm_Chr2g0102041
rosa_laevigata	RLG00000001517 RLG00000003267 RLG00000004936 RLG00000008941 RLG00000021775 RLG00000023713 RLG00000026284 RLG00000035166
rosa_multiflora	Rmu_co8145792.1_g000001 Rmu_co8424905.1_g000001 Rmu_co8458399.1_g000001 Rmu_sc0002486.1_g000005 Rmu_sc0003730.1_g000009 Rmu_sc0011739.1_g000001 Rmu_ssc0000015.1_g000010
rosa_roxburghii	Rroxscaffold_2G00097880 Rroxscaffold_4G00279180 Rroxscaffold_4G00279190 Rroxscaffold_6G00388540
rosa_rugosa	Rorug01G0422600
rosa_samantha	Rh1AG447100 Rh1BG202200 Rh1BG402400 Rh1CG416600 Rh1CG416700 Rh1CG416800 Rh1CG416900 Rh1DG432600 Rh2CG116900 Rh2CG157700 Rh2CG157800 Rh2CG241900 Rh4BG088800 Rh4BG088900 Rh5BG519200 Rh5CG542800 Rh5DG400800
rosa_wichuraiana	Rw1G038890 Rw5G046210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	140, 310
AcuI	CTGAAG	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	256, 296, 317
AluI	AGCT	3 cut(s)	256, 296, 317
Alw26I	GTCTC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	2 cut(s)	140, 310
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	62, 222, 288
BseXI	GCAGC	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	63, 221, 289
BspLI	GGNNCC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	71, 208, 297
BstMAI	GTCTC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	133
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	3 cut(s)	256, 296, 317
CviKI_1	RGCY	3 cut(s)	256, 296, 317
DdeI	CTNAG	3 cut(s)	71, 208, 297
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	267
FaiI	YATR	6 cut(s)	101, 120, 146, 170, 204, 265
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	267
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	188, 235
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	81, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	71, 208, 297
Hsp92II	CATG	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	19, 223, 250
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	58
MluCI	AATT	2 cut(s)	140, 310
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	102, 144, 191, 292
MseI	TTAA	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	58
PctI	GAATGC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	8 cut(s)	107, 138, 155, 202, 246, 258, 298, 319
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	2 cut(s)	140, 310
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	140, 310
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	264, 294
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	140, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.