Rh5BG519200
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001331
Physical Location & Seq
Forward (+)
82078405 .. 82081481
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG519200.1

Sequence Viewer

Length: 1038 bp
ATGATTAGAGGGCTTGCAGAGATTGGGACACTGATGAAGGCAATCCCAATCTTCAATTTTTTGCTGCCCGTTTTGGAAGATCCAAAGTCCAGCCCCACCTCACTGGCAAAAGGTTATGCAAAGAGAAGAATTTTCCTTAAAGTTGAAGCCTTTGTGAATGAAATGGGTATGAGCAGACCTCACAAGGTCAGCAATGGAATCGCCACCAGATGTGACTTCCGTGCTCGGCAATTGAAGAACTCAGAACATACTGGGCAAAAAGTCTGTAAGAGACCTAGAGGGAGACCTAGGAAGTTTAGCAACCTACAGGCGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTATGGTGCCACCAGTGCTTACGAAATGACAGAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCCCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAATTACAACTGCAGAATATGCCTCAAGGAGTATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAACTCTGCCTCTCCTTAAGCATATTCAACAGGAGCAGAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGGTGTACAATTGACAGAAGAGGACCTCACGAGGTCTATACTAGAGGATGATGATCGAGTTTACTGGATGGAAGAGGTTGAAAACCATTTTAGTCTTATTTTCCTTTATAGGTATAAGAAAGTTGGGTACTTGGATACTGATGTTGGGCAACTTGAGTTTAGTCCTCCTGGAGTGCTGATCAACATGGTTAAGCCTTTCACAAAGGATGATATGTGCCATTGTTTTGGTTGCCTGTTTCTCATGAGAAAACTATCTCACAAGATCTGGAGTTGGAATTGGTTTTTGCGGGCATGTCTCTATGAACTGAACCTTTCAAGGCAATGCTTATGTGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

345

Amino Acids

40.38

Weight (kDa)

8.91

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 121 - 186 9.6e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 375, 468
AccI GTMKAC 1 cut(s) 694
AciI CCGC 1 cut(s) 985
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 3 cut(s) 470, 705, 827
AfiI CCNNNNNNNGG 1 cut(s) 331
AflII CTTAAG 2 cut(s) 326, 644
AgsI TTSAA 6 cut(s) 55, 146, 235, 656, 779, 1014
AjnI CCWGG 2 cut(s) 317, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 2 cut(s) 690, 1035
AluI AGCT 2 cut(s) 690, 1035
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 3 cut(s) 265, 277, 998
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 468
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 322, 721
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 2 cut(s) 322, 721
AvrII CCTAGG 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BanI GGYRCC 2 cut(s) 375, 468
BauI CACGAG 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 559, 760
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 2 cut(s) 319, 867
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 1 cut(s) 876
BcoDI GTCTC 3 cut(s) 265, 277, 998
BfaI CTAG 3 cut(s) 276, 288, 740
BfmI CTRYAG 2 cut(s) 305, 532
BfrI CTTAAG 2 cut(s) 326, 644
BfuI GTATCC 1 cut(s) 826
BglII AGATCT 2 cut(s) 668, 960
BisI GCNGC 1 cut(s) 65
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 319, 867
Bme18I GGWCC 2 cut(s) 322, 721
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 322, 721
BmiI GGNNCC 3 cut(s) 323, 377, 470
BmrFI CCNGG 2 cut(s) 319, 867
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpmI CTGGAG 2 cut(s) 888, 985
BpuEI CTTGAG 2 cut(s) 530, 872
BsaAI YACGTR 1 cut(s) 698
BsaBI GATNNNNATC 1 cut(s) 750
BsaI GGTCTC 2 cut(s) 265, 277
BsaJI CCNNGG 3 cut(s) 287, 317, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 4 cut(s) 108, 256, 382, 767
Bse3DI GCAATG 2 cut(s) 199, 1025
Bse8I GATNNNNATC 1 cut(s) 750
BseBI CCWGG 2 cut(s) 319, 867
BseDI CCNNGG 3 cut(s) 287, 317, 318
BseGI GGATG 4 cut(s) 313, 751, 771, 910
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 2 cut(s) 199, 1025
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 4 cut(s) 108, 256, 382, 767
BseXI GCAGC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 569
BshNI GGYRCC 2 cut(s) 375, 468
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 473
BslFI GGGAC 2 cut(s) 40, 335
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 3 cut(s) 265, 277, 998
BsmFI GGGAC 2 cut(s) 40, 335
Bso31I GGTCTC 2 cut(s) 265, 277
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 703
Bsp143I GATC 5 cut(s) 79, 668, 751, 876, 960
BspACI CCGC 1 cut(s) 985
BspCNI CTCAG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 3 cut(s) 323, 377, 470
BspMAI CTGCAG 1 cut(s) 536
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 2 cut(s) 375, 468
BspTI CTTAAG 2 cut(s) 326, 644
BspTNI GGTCTC 2 cut(s) 265, 277
BsrDI GCAATG 2 cut(s) 199, 1025
BsrGI TGTACA 1 cut(s) 703
BsrI ACTGG 4 cut(s) 108, 256, 382, 767
BssECI CCNNGG 3 cut(s) 287, 317, 318
BssMI GATC 5 cut(s) 79, 668, 751, 876, 960
BssNAI GTATAC 1 cut(s) 695
BssSI CACGAG 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 727
Bst2UI CCWGG 2 cut(s) 319, 867
Bst6I CTCTTC 2 cut(s) 711, 765
BstAFI CTTAAG 2 cut(s) 326, 644
BstAPI GCANNNNNTGC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 703
BstBAI YACGTR 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 15, 987
BstDEI CTNAG 1 cut(s) 241
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 313, 751, 771, 910
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 82, 671, 754, 879, 963
BstMAI GTCTC 3 cut(s) 265, 277, 998
BstMBI GATC 5 cut(s) 79, 668, 751, 876, 960
BstMWI GCNNNNNNNGC 4 cut(s) 384, 453, 540, 619
BstNI CCWGG 2 cut(s) 319, 867
BstNSI RCATGY 1 cut(s) 993
BstSCI CCNGG 2 cut(s) 317, 865
BstSFI CTRYAG 2 cut(s) 305, 532
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 3 cut(s) 79, 668, 960
BstXI CCANNNNNNTGG 2 cut(s) 103, 923
BstYI RGATCY 3 cut(s) 79, 668, 960
BstZ17I GTATAC 1 cut(s) 695
BsuI GTATCC 1 cut(s) 826
BtsCI GGATG 4 cut(s) 313, 751, 771, 910
BtsIMutI CAGTG 3 cut(s) 29, 101, 389
Cac8I GCNNGC 2 cut(s) 15, 987
CciI TCATGA 1 cut(s) 939
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 322, 721
Csp6I GTAC 3 cut(s) 469, 704, 826
CviAII CATG 4 cut(s) 575, 883, 940, 990
CviJI RGCY 7 cut(s) 13, 93, 149, 569, 690, 892, 1035
CviKI_1 RGCY 7 cut(s) 13, 93, 149, 569, 690, 892, 1035
CviQI GTAC 3 cut(s) 469, 704, 826
DdeI CTNAG 1 cut(s) 241
DpnI GATC 5 cut(s) 81, 670, 753, 878, 962
DpnII GATC 5 cut(s) 79, 668, 751, 876, 960
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 711, 765
EarI CTCTTC 2 cut(s) 711, 765
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 2 cut(s) 265, 277
Eco47I GGWCC 2 cut(s) 322, 721
Eco88I CYCGRG 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 2 cut(s) 322, 721
EcoRII CCWGG 2 cut(s) 317, 865
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 4 cut(s) 578, 886, 943, 993
FaqI GGGAC 2 cut(s) 40, 335
FatI CATG 4 cut(s) 574, 882, 939, 989
FauI CCCGC 1 cut(s) 978
FbaI TGATCA 1 cut(s) 876
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 4 cut(s) 300, 758, 778, 917
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 3 cut(s) 276, 288, 740
GlaI GCGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 1 cut(s) 573
GsuI CTGGAG 2 cut(s) 888, 985
HhaI GCGC 1 cut(s) 313
Hin1II CATG 4 cut(s) 578, 886, 943, 993
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 1 cut(s) 198
Hpy166II GTNNAC 3 cut(s) 695, 704, 760
Hpy188I TCNGA 2 cut(s) 244, 673
Hpy188III TCNNGA 3 cut(s) 727, 940, 964
Hpy8I GTNNAC 3 cut(s) 695, 704, 760
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 6 cut(s) 17, 119, 429, 461, 534, 627
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 453, 540, 619
HpyF3I CTNAG 1 cut(s) 241
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 4 cut(s) 578, 886, 943, 993
HspAI GCGC 1 cut(s) 311
KpnI GGTACC 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 876
Kzo9I GATC 5 cut(s) 79, 668, 751, 876, 960
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 322
MaeI CTAG 3 cut(s) 276, 288, 740
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 1 cut(s) 212
MalI GATC 5 cut(s) 81, 670, 753, 878, 962
MboI GATC 5 cut(s) 79, 668, 751, 876, 960
MboII GAAGA 8 cut(s) 43, 89, 138, 247, 490, 590, 728, 782
MfeI CAATTG 2 cut(s) 230, 707
MflI RGATCY 3 cut(s) 79, 668, 960
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 9 cut(s) 55, 129, 230, 424, 523, 599, 674, 707, 973
MmeI TCCRAC 1 cut(s) 950
MseI TTAA 6 cut(s) 138, 327, 422, 597, 645, 888
MspCI CTTAAG 2 cut(s) 326, 644
MspR9I CCNGG 2 cut(s) 319, 867
MunI CAATTG 2 cut(s) 230, 707
MvaI CCWGG 2 cut(s) 319, 867
MwoI GCNNNNNNNGC 4 cut(s) 384, 453, 540, 619
NdeII GATC 5 cut(s) 79, 668, 751, 876, 960
NlaIII CATG 4 cut(s) 578, 886, 943, 993
NlaIV GGNNCC 3 cut(s) 323, 377, 470
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 993
PagI TCATGA 1 cut(s) 939
PasI CCCWGGG 1 cut(s) 318
PfeI GAWTC 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 698
PpuMI RGGWCCY 2 cut(s) 322, 721
Psp5II RGGWCCY 2 cut(s) 322, 721
Psp6I CCWGG 2 cut(s) 317, 865
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 2 cut(s) 317, 865
PspN4I GGNNCC 3 cut(s) 323, 377, 470
PspPI GGNCC 2 cut(s) 322, 721
PspPPI RGGWCCY 2 cut(s) 322, 721
PstI CTGCAG 1 cut(s) 536
PsuI RGATCY 3 cut(s) 79, 668, 960
RsaI GTAC 3 cut(s) 470, 705, 827
RsaNI GTAC 3 cut(s) 469, 704, 826
SaqAI TTAA 6 cut(s) 138, 327, 422, 597, 645, 888
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 5 cut(s) 79, 668, 751, 876, 960
Sau96I GGNCC 2 cut(s) 322, 721
ScrFI CCNGG 2 cut(s) 319, 867
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 2 cut(s) 305, 532
SinI GGWCC 2 cut(s) 322, 721
SmlI CTYRAG 4 cut(s) 326, 545, 644, 851
SmoI CTYRAG 4 cut(s) 326, 545, 644, 851
Sse9I AATT 9 cut(s) 55, 129, 230, 424, 523, 599, 674, 707, 973
SsiI CCGC 1 cut(s) 985
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 276, 288, 740
StyD4I CCNGG 2 cut(s) 317, 865
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 1 cut(s) 700
TaqI TCGA 1 cut(s) 754
TasI AATT 9 cut(s) 55, 129, 230, 424, 523, 599, 674, 707, 973
TatI WGTACW 1 cut(s) 703
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 6 cut(s) 138, 327, 422, 597, 645, 888
Tru9I TTAA 6 cut(s) 138, 327, 422, 597, 645, 888
TscAI CASTG 3 cut(s) 36, 108, 389
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 50, 174, 591, 1014
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 3 cut(s) 36, 108, 389
Vha464I CTTAAG 2 cut(s) 326, 644
VpaK11BI GGWCC 2 cut(s) 322, 721
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 993
XmaJI CCTAGG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 694
XspI CTAG 3 cut(s) 276, 288, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.