Rh5DG400800

JmjC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
63416372 .. 63419448
3077 bp
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UTR
Exon/CDS
Intron
Rh5DG400800.1

Sequence Viewer

Length: 228 bp
ATGGGTGGTATAGTCTTATCATATCCAGCCATATTGTCTCAGAGACATAACGGGTTCAGTCTCGCCTTCTCTAGGATCTCTCACAATCCAAACCCCAATTTCCCGATCGGGTTCAGTGAAGGTGAAATAGAGATGGTAAATGGGAATGAGATGAGTTCTAGTGAGTTTGTGGAGAGGTACTTGGAGAATAACCAGTCTGTGGTGCTCACAGGTCTCATGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.29

Weight (kDa)

4.55

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AclWI GGATC 1 cut(s) 83
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 72, 199
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 4 cut(s) 37, 42, 65, 218
AlwI GGATC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 4 cut(s) 37, 42, 65, 218
BfaI CTAG 2 cut(s) 72, 159
BsaI GGTCTC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 199
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 72, 199
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 72, 199
BsmAI GTCTC 4 cut(s) 37, 42, 65, 218
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 75, 105
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 193
BssMI GATC 2 cut(s) 75, 105
BstDEI CTNAG 1 cut(s) 39
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 78, 108
BstMAI GTCTC 4 cut(s) 37, 42, 65, 218
BstMBI GATC 2 cut(s) 75, 105
BstMCI CGRYCG 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 217
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 77, 107
DpnII GATC 2 cut(s) 75, 105
Eco31I GGTCTC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 70
FaeI CATG 1 cut(s) 220
FaiI YATR 5 cut(s) 11, 22, 32, 48, 218
FatI CATG 1 cut(s) 216
FspBI CTAG 2 cut(s) 72, 159
Hin1II CATG 1 cut(s) 220
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 76, 113
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 1 cut(s) 220
Kzo9I GATC 2 cut(s) 75, 105
LpnPI CCDG 3 cut(s) 39, 195, 206
MaeI CTAG 2 cut(s) 72, 159
MalI GATC 2 cut(s) 77, 107
MboI GATC 2 cut(s) 75, 105
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 97
MnlI CCTC 1 cut(s) 168
NdeII GATC 2 cut(s) 75, 105
NlaIII CATG 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 75
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Sau3AI GATC 2 cut(s) 75, 105
SduI GDGCHC 1 cut(s) 207
SetI ASST 3 cut(s) 124, 179, 214
Sse9I AATT 1 cut(s) 97
SspMI CTAG 2 cut(s) 72, 159
TasI AATT 1 cut(s) 97
TscAI CASTG 1 cut(s) 121
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 70
XspI CTAG 2 cut(s) 72, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.