RLG00000021775
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001331
Physical Location & Seq
Reverse (-)
78095955 .. 78097946
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021775

Sequence Viewer

Length: 1044 bp
ATGATTAGAGGGCTTGCAGAGATTGGGACACTGATGAAGGCAATCCCAATCTTCAATTTTTTGCTGCCCGTTTTGGAAGATCCAAAGTCCAGCCCCACCTCACTAGCAAAAGGTTATGCAAAGAGAAGAATGTTCCTTAAAGCTGAAGCCTTTGTGAATGAAATGGGTCTGAGCAGACCTCACAAGGTCAGCAATGGAATCGCCACCAGATGGGTTTCTCTGTTTTGCATTGCCAGTTTCTTCTTGGGTGTTCTTGTTATCAACAGTCTTTGCTTTTATTTGAAAGAGGAACAGAGTTTCCCTACAGCGCAATTAAAGAAATCTGCAGATACTGAGAAAAAATTACAGAAGAGGCCTAGAGGGAGACCCAGGAAGATCAACAACCAACCAATGAATCACGATGAATTCCGTACTCAGCAATTAAAGAACTCAGAAGATACTGAGAAAAAATTTCATAAGAGGCTTAGAGTCTGTAAGAGACCTAGAGGGAGACCTAGGAAGTTTAGCAACCTACAGGCGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTATGGTGCCACCAGTGCTTACGGAATGACATAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCCCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAACTGCAACTGCAGAATATGCCTGAAGGAGTATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTTCAAAAGTACTCTGCCTCTCCTTAAGCATATTCAACGGGAGCAAAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGGTGTACAATTGACAGAAGAGGACCTCACGAGGTCTATACTAGAGGATGATGATCGAGTTTACTGGTACACCTCAATTCTCCCTAATGATCATAATTCAATCACCCATCATGCTCAAGATTCCCACTTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

348

Amino Acids

40.54

Weight (kDa)

9.26

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 190 - 255 1.4e-08 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 675
AccB1I GGYRCC 2 cut(s) 582, 675
AccB7I CCANNNNNTGG 1 cut(s) 210
AccI GTMKAC 1 cut(s) 904
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 404, 449
AcuI CTGAAG 2 cut(s) 165, 773
AfaI GTAC 5 cut(s) 412, 677, 841, 915, 977
AfiI CCNNNNNNNGG 2 cut(s) 210, 538
AflII CTTAAG 2 cut(s) 533, 854
AgsI TTSAA 5 cut(s) 55, 283, 835, 866, 1008
AjnI CCWGG 2 cut(s) 368, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 2 cut(s) 143, 900
AluI AGCT 2 cut(s) 143, 900
Alw26I GTCTC 3 cut(s) 358, 472, 484
AlwI GGATC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 404, 449
Asp718I GGTACC 1 cut(s) 675
AspA2I CCTAGG 1 cut(s) 494
AspLEI GCGC 2 cut(s) 310, 520
AspS9I GGNCC 2 cut(s) 529, 931
AsuHPI GGTGA 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 680
AvaII GGWCC 2 cut(s) 529, 931
AvrII CCTAGG 1 cut(s) 494
BanI GGYRCC 2 cut(s) 582, 675
BauI CACGAG 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 51
BccI CCATC 3 cut(s) 204, 766, 1023
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 2 cut(s) 370, 526
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 3 cut(s) 358, 472, 484
BfaI CTAG 5 cut(s) 104, 357, 483, 495, 950
BfmI CTRYAG 4 cut(s) 303, 324, 512, 739
BfrI CTTAAG 2 cut(s) 533, 854
BglII AGATCT 1 cut(s) 878
BisI GCNGC 1 cut(s) 65
BlnI CCTAGG 1 cut(s) 494
BlsI GCNGC 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 841
Bme1390I CCNGG 2 cut(s) 370, 526
Bme18I GGWCC 2 cut(s) 529, 931
BmeT110I CYCGRG 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 529, 931
BmiI GGNNCC 3 cut(s) 530, 584, 677
BmrFI CCNGG 2 cut(s) 370, 526
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpuEI CTTGAG 1 cut(s) 1008
BsaAI YACGTR 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 960
BsaI GGTCTC 3 cut(s) 358, 472, 484
BsaJI CCNNGG 4 cut(s) 368, 494, 524, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 538
Bse1I ACTGG 3 cut(s) 234, 589, 977
Bse3DI GCAATG 2 cut(s) 199, 228
Bse8I GATNNNNATC 1 cut(s) 960
BseBI CCWGG 2 cut(s) 370, 526
BseDI CCNNGG 4 cut(s) 368, 494, 524, 525
BseGI GGATG 2 cut(s) 520, 961
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 2 cut(s) 210, 538
BseMI GCAATG 2 cut(s) 199, 228
BseMII CTCAG 5 cut(s) 161, 324, 428, 432, 444
BseNI ACTGG 3 cut(s) 234, 589, 977
BseXI GCAGC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 776
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 2 cut(s) 582, 675
BsiHKCI CYCGRG 1 cut(s) 680
BslFI GGGAC 2 cut(s) 40, 542
BslI CCNNNNNNNGG 2 cut(s) 210, 538
BsmAI GTCTC 3 cut(s) 358, 472, 484
BsmFI GGGAC 2 cut(s) 40, 542
BsnI GGCC 1 cut(s) 355
Bso31I GGTCTC 3 cut(s) 358, 472, 484
BsoBI CYCGRG 1 cut(s) 680
Bsp1407I TGTACA 1 cut(s) 913
Bsp143I GATC 5 cut(s) 79, 375, 878, 961, 997
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 5 cut(s) 162, 325, 427, 433, 443
BspLI GGNNCC 3 cut(s) 530, 584, 677
BspMAI CTGCAG 2 cut(s) 328, 743
BspPI GGATC 1 cut(s) 74
BspT107I GGYRCC 2 cut(s) 582, 675
BspTI CTTAAG 2 cut(s) 533, 854
BspTNI GGTCTC 3 cut(s) 358, 472, 484
BsrDI GCAATG 2 cut(s) 199, 228
BsrGI TGTACA 1 cut(s) 913
BsrI ACTGG 3 cut(s) 234, 589, 977
BssECI CCNNGG 4 cut(s) 368, 494, 524, 525
BssMI GATC 5 cut(s) 79, 375, 878, 961, 997
BssNAI GTATAC 1 cut(s) 905
BssSI CACGAG 1 cut(s) 937
BssT1I CCWWGG 1 cut(s) 494
Bst1107I GTATAC 1 cut(s) 905
Bst2BI CACGAG 1 cut(s) 937
Bst2UI CCWGG 2 cut(s) 370, 526
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 2 cut(s) 344, 921
BstAFI CTTAAG 2 cut(s) 533, 854
BstAPI GCANNNNNTGC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 913
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 6 cut(s) 170, 333, 414, 430, 441, 464
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 2 cut(s) 520, 961
BstHHI GCGC 2 cut(s) 310, 520
BstKTI GATC 5 cut(s) 82, 378, 881, 964, 1000
BstMAI GTCTC 3 cut(s) 358, 472, 484
BstMBI GATC 5 cut(s) 79, 375, 878, 961, 997
BstMWI GCNNNNNNNGC 4 cut(s) 591, 660, 747, 826
BstNI CCWGG 2 cut(s) 370, 526
BstSCI CCNGG 2 cut(s) 368, 524
BstSFI CTRYAG 4 cut(s) 303, 324, 512, 739
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 2 cut(s) 79, 878
BstYI RGATCY 2 cut(s) 79, 878
BstZ17I GTATAC 1 cut(s) 905
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 520, 961
BtsIMutI CAGTG 2 cut(s) 29, 596
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 2 cut(s) 310, 520
Cfr13I GGNCC 2 cut(s) 529, 931
Csp6I GTAC 5 cut(s) 411, 676, 840, 914, 976
CviAII CATG 2 cut(s) 782, 1019
CviJI RGCY 8 cut(s) 13, 93, 143, 149, 355, 463, 776, 900
CviKI_1 RGCY 8 cut(s) 13, 93, 143, 149, 355, 463, 776, 900
CviQI GTAC 5 cut(s) 411, 676, 840, 914, 976
DdeI CTNAG 6 cut(s) 170, 333, 414, 430, 441, 464
DpnI GATC 5 cut(s) 81, 377, 880, 963, 999
DpnII GATC 5 cut(s) 79, 375, 878, 961, 997
DraI TTTAAA 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 344, 921
EarI CTCTTC 2 cut(s) 344, 921
Eco130I CCWWGG 1 cut(s) 494
Eco147I AGGCCT 1 cut(s) 355
Eco31I GGTCTC 3 cut(s) 358, 472, 484
Eco47I GGWCC 2 cut(s) 529, 931
Eco57I CTGAAG 2 cut(s) 165, 773
Eco88I CYCGRG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 2 cut(s) 529, 931
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 368, 524
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 2 cut(s) 785, 1022
FaqI GGGAC 2 cut(s) 40, 542
FatI CATG 2 cut(s) 781, 1018
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 1 cut(s) 904
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 2 cut(s) 507, 968
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 5 cut(s) 104, 357, 483, 495, 950
GlaI GCGC 2 cut(s) 309, 519
GluI GCNGC 1 cut(s) 65
GsaI CCCAGC 1 cut(s) 780
HaeIII GGCC 1 cut(s) 355
HhaI GCGC 2 cut(s) 310, 520
Hin1II CATG 2 cut(s) 785, 1022
Hin6I GCGC 2 cut(s) 308, 518
HinP1I GCGC 2 cut(s) 308, 518
HinfI GANTC 4 cut(s) 198, 394, 468, 1028
HphI GGTGA 1 cut(s) 1003
Hpy166II GTNNAC 4 cut(s) 905, 914, 970, 978
Hpy188I TCNGA 3 cut(s) 171, 433, 883
Hpy188III TCNNGA 3 cut(s) 398, 937, 1025
Hpy8I GTNNAC 4 cut(s) 905, 914, 970, 978
HpyAV CCTTC 2 cut(s) 31, 748
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 907
HpyCH4V TGCA 8 cut(s) 17, 119, 228, 326, 636, 668, 735, 741
HpyF10VI GCNNNNNNNGC 4 cut(s) 591, 660, 747, 826
HpyF3I CTNAG 6 cut(s) 170, 333, 414, 430, 441, 464
HpySE526I ACGT 1 cut(s) 907
Hsp92II CATG 2 cut(s) 785, 1022
HspAI GCGC 2 cut(s) 308, 518
KpnI GGTACC 1 cut(s) 679
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 5 cut(s) 79, 375, 878, 961, 997
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 529
MaeI CTAG 5 cut(s) 104, 357, 483, 495, 950
MaeII ACGT 1 cut(s) 907
MalI GATC 5 cut(s) 81, 377, 880, 963, 999
MboI GATC 5 cut(s) 79, 375, 878, 961, 997
MfeI CAATTG 1 cut(s) 917
MflI RGATCY 2 cut(s) 79, 878
MlyI GAGTC 1 cut(s) 477
MseI TTAA 7 cut(s) 138, 314, 422, 534, 629, 804, 855
MspCI CTTAAG 2 cut(s) 533, 854
MspR9I CCNGG 2 cut(s) 370, 526
MunI CAATTG 1 cut(s) 917
MvaI CCWGG 2 cut(s) 370, 526
MwoI GCNNNNNNNGC 4 cut(s) 591, 660, 747, 826
NdeII GATC 5 cut(s) 79, 375, 878, 961, 997
NlaIII CATG 2 cut(s) 785, 1022
NlaIV GGNNCC 3 cut(s) 530, 584, 677
PasI CCCWGGG 1 cut(s) 525
PceI AGGCCT 1 cut(s) 355
PfeI GAWTC 3 cut(s) 198, 394, 1028
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 908
PpuMI RGGWCCY 2 cut(s) 529, 931
Psp5II RGGWCCY 2 cut(s) 529, 931
Psp6I CCWGG 2 cut(s) 368, 524
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 2 cut(s) 368, 524
PspN4I GGNNCC 3 cut(s) 530, 584, 677
PspPI GGNCC 2 cut(s) 529, 931
PspPPI RGGWCCY 2 cut(s) 529, 931
PstI CTGCAG 2 cut(s) 328, 743
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 2 cut(s) 79, 878
RsaI GTAC 5 cut(s) 412, 677, 841, 915, 977
RsaNI GTAC 5 cut(s) 411, 676, 840, 914, 976
SaqAI TTAA 7 cut(s) 138, 314, 422, 534, 629, 804, 855
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 5 cut(s) 79, 375, 878, 961, 997
Sau96I GGNCC 2 cut(s) 529, 931
ScaI AGTACT 1 cut(s) 841
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 370, 526
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 4 cut(s) 303, 324, 512, 739
SinI GGWCC 2 cut(s) 529, 931
SmlI CTYRAG 3 cut(s) 533, 854, 1023
SmoI CTYRAG 3 cut(s) 533, 854, 1023
SseBI AGGCCT 1 cut(s) 355
SspI AATATT 1 cut(s) 802
SspMI CTAG 5 cut(s) 104, 357, 483, 495, 950
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 368, 524
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 910
TaqI TCGA 1 cut(s) 964
TatI WGTACW 2 cut(s) 839, 913
TfiI GAWTC 3 cut(s) 198, 394, 1028
Tru1I TTAA 7 cut(s) 138, 314, 422, 534, 629, 804, 855
Tru9I TTAA 7 cut(s) 138, 314, 422, 534, 629, 804, 855
TscAI CASTG 2 cut(s) 36, 596
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 6 cut(s) 50, 174, 407, 417, 443, 798
TspGWI ACGGA 2 cut(s) 398, 613
TspRI CASTG 2 cut(s) 36, 596
Van91I CCANNNNNTGG 1 cut(s) 210
Vha464I CTTAAG 2 cut(s) 533, 854
VpaK11BI GGWCC 2 cut(s) 529, 931
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 2 cut(s) 404, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmaJI CCTAGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 904
XspI CTAG 5 cut(s) 104, 357, 483, 495, 950
ZrmI AGTACT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.