Rmu_sc0003730.1_g000009
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003730.1
OG0001331
Physical Location & Seq
Forward (+)
24772 .. 28142
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003730.1_g000009.1.cds

Sequence Viewer

Length: 903 bp
atgacctgcgaaggcgcggccaggcaggctaccgctagagtcctgggcagcccccagatcaccgctgacgcgccgccacgcgccgcgtcaagagagcgtcagaagctccagacactgggaatcgaagcacatcaatcccacatcggaaacaagaagaagatcaacctcttcctcacatataaaaagagacataacgggttcagtctcgccttctctaggatctctcacaatccaaaccccaatttcccgatcgggttcagtgaaggtgaaatagagatggtaaatgggaaagagatgagttctagtgagtttgtggagaggtacttggagaataaccagtctgtggtgctcacagtctgtaagagacctagagggagacccaggaagtttagcaacctacaggcgcatcctagggaccttaagcagggaatatctactgatatattggagagaaatgaaagtttatggtgccaccagtgtttacggaatgacagaaatggtgtcatcatttgtttaaattgcagaaagaaacgctattgctatgactgccttgcaaagtggtaccccgagaagacaaaagaggacatagagattgcttgtccttattgtcgtgggaactgcaactgcagaatatgcctcaaggaggatttagttgtgatgaaatatgatgcttacccagtggcaaaggcagctgctgcaactatcctgggcatccaagttgggtgtagattgcatttaggagatgaatctagagctaatttgtcgcacaagataatgaacctgtccatcaaaatcctcaagcgtatgctgcacaagatgacattttttggacaatttaagtgtgcagcaacattgtcttcacactctgagatccctgcactttatttggaggccatcaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

300

Amino Acids

34.03

Weight (kDa)

9.39

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 561
AccB1I GGYRCC 2 cut(s) 468, 561
AccB7I CCANNNNNTGG 2 cut(s) 115, 343
AccII CGCG 4 cut(s) 17, 71, 81, 86
AciI CCGC 5 cut(s) 17, 33, 63, 74, 84
AclWI GGATC 2 cut(s) 227, 865
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 2 cut(s) 323, 563
AfiI CCNNNNNNNGG 5 cut(s) 115, 216, 343, 424, 643
AflII CTTAAG 1 cut(s) 419
AjnI CCWGG 4 cut(s) 20, 42, 380, 705
AluBI AGCT 3 cut(s) 106, 692, 755
AluI AGCT 3 cut(s) 106, 692, 755
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 4 cut(s) 181, 209, 358, 370
AlwI GGATC 2 cut(s) 227, 865
AlwNI CAGNNNCTG 2 cut(s) 115, 695
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 2 cut(s) 18, 891
ApeKI GCWGC 6 cut(s) 48, 689, 692, 695, 808, 845
Asp718I GGTACC 1 cut(s) 561
AspA2I CCTAGG 1 cut(s) 410
AspLEI GCGC 4 cut(s) 17, 73, 83, 406
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 52, 278
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 415
AvrII CCTAGG 1 cut(s) 410
BanI GGYRCC 2 cut(s) 468, 561
BbsI GAAGAC 2 cut(s) 578, 849
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 6 cut(s) 60, 679, 682, 701, 795, 857
BccI CCATC 3 cut(s) 271, 794, 902
BciT130I CCWGG 4 cut(s) 22, 44, 382, 707
BcoDI GTCTC 4 cut(s) 181, 209, 358, 370
BfaI CTAG 6 cut(s) 36, 216, 303, 369, 411, 750
BfmI CTRYAG 2 cut(s) 398, 625
BfrI CTTAAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 9 cut(s) 18, 49, 74, 84, 690, 693, 696, 809, 846
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 9 cut(s) 19, 50, 75, 85, 691, 694, 697, 810, 847
Bme1390I CCNGG 4 cut(s) 22, 44, 382, 707
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 3 cut(s) 416, 470, 563
BmrFI CCNGG 4 cut(s) 22, 44, 382, 707
BmrI ACTGGG 2 cut(s) 125, 671
BmsI GCATC 3 cut(s) 415, 658, 720
BmuI ACTGGG 2 cut(s) 125, 671
BpiI GAAGAC 2 cut(s) 578, 849
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 2 cut(s) 623, 782
BsaI GGTCTC 2 cut(s) 358, 370
BsaJI CCNNGG 4 cut(s) 43, 380, 410, 706
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 216, 343, 424, 643
Bse1I ACTGG 4 cut(s) 120, 337, 475, 677
BseBI CCWGG 4 cut(s) 22, 44, 382, 707
BseDI CCNNGG 4 cut(s) 43, 380, 410, 706
BseGI GGATG 2 cut(s) 406, 711
BseLI CCNNNNNNNGG 5 cut(s) 115, 216, 343, 424, 643
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 4 cut(s) 120, 337, 475, 677
BseXI GCAGC 6 cut(s) 60, 679, 682, 701, 795, 857
BsgI GTGCAG 3 cut(s) 794, 861, 864
Bsh1236I CGCG 4 cut(s) 17, 71, 81, 86
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 20, 893
BshNI GGYRCC 2 cut(s) 468, 561
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 5 cut(s) 115, 216, 343, 424, 643
BsmAI GTCTC 4 cut(s) 181, 209, 358, 370
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 20, 893
Bso31I GGTCTC 2 cut(s) 358, 370
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 5 cut(s) 57, 159, 219, 249, 870
BspACI CCGC 5 cut(s) 17, 33, 63, 74, 84
BspANI GGCC 2 cut(s) 20, 893
BspCNI CTCAG 1 cut(s) 859
BspFNI CGCG 4 cut(s) 17, 71, 81, 86
BspLI GGNNCC 3 cut(s) 416, 470, 563
BspMAI CTGCAG 1 cut(s) 629
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 2 cut(s) 227, 865
BspT107I GGYRCC 2 cut(s) 468, 561
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 2 cut(s) 358, 370
BsrI ACTGG 4 cut(s) 120, 337, 475, 677
BssECI CCNNGG 4 cut(s) 43, 380, 410, 706
BssMI GATC 5 cut(s) 57, 159, 219, 249, 870
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 4 cut(s) 22, 44, 382, 707
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 419
BstAPI GCANNNNNTGC 2 cut(s) 633, 695
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 867
BstENI CCTNNNNNAGG 3 cut(s) 214, 422, 641
BstF5I GGATG 2 cut(s) 406, 711
BstFNI CGCG 4 cut(s) 17, 71, 81, 86
BstHHI GCGC 4 cut(s) 17, 73, 83, 406
BstKTI GATC 5 cut(s) 60, 162, 222, 252, 873
BstMAI GTCTC 4 cut(s) 181, 209, 358, 370
BstMBI GATC 5 cut(s) 57, 159, 219, 249, 870
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 7 cut(s) 26, 103, 546, 633, 689, 695, 808
BstNI CCWGG 4 cut(s) 22, 44, 382, 707
BstSCI CCNGG 4 cut(s) 20, 42, 380, 705
BstSFI CTRYAG 2 cut(s) 398, 625
BstUI CGCG 4 cut(s) 17, 71, 81, 86
BstV1I GCAGC 6 cut(s) 60, 679, 682, 701, 795, 857
BstV2I GAAGAC 2 cut(s) 578, 849
BstX2I RGATCY 2 cut(s) 219, 870
BstYI RGATCY 2 cut(s) 219, 870
BsuRI GGCC 2 cut(s) 20, 893
BtsCI GGATG 2 cut(s) 406, 711
BtsIMutI CAGTG 4 cut(s) 113, 265, 482, 684
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 2 cut(s) 115, 695
CfoI GCGC 4 cut(s) 17, 73, 83, 406
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 3 cut(s) 75, 77, 86
Csp6I GTAC 2 cut(s) 322, 562
CviJI RGCY 7 cut(s) 20, 29, 51, 106, 692, 755, 893
CviKI_1 RGCY 7 cut(s) 20, 29, 51, 106, 692, 755, 893
CviQI GTAC 2 cut(s) 322, 562
DdeI CTNAG 1 cut(s) 867
DpnI GATC 5 cut(s) 59, 161, 221, 251, 872
DpnII GATC 5 cut(s) 57, 159, 219, 249, 870
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 410
Eco31I GGTCTC 2 cut(s) 358, 370
Eco47I GGWCC 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 566
EcoNI CCTNNNNNAGG 3 cut(s) 214, 422, 641
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 4 cut(s) 20, 42, 380, 705
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
FaqI GGGAC 1 cut(s) 428
Fnu4HI GCNGC 9 cut(s) 18, 49, 74, 84, 690, 693, 696, 809, 846
FokI GGATG 2 cut(s) 393, 698
Fsp4HI GCNGC 9 cut(s) 18, 49, 74, 84, 690, 693, 696, 809, 846
FspBI CTAG 6 cut(s) 36, 216, 303, 369, 411, 750
GlaI GCGC 4 cut(s) 16, 72, 82, 405
GluI GCNGC 9 cut(s) 18, 49, 74, 84, 690, 693, 696, 809, 846
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 2 cut(s) 20, 893
HgaI GACGC 3 cut(s) 75, 77, 86
HhaI GCGC 4 cut(s) 17, 73, 83, 406
Hin6I GCGC 4 cut(s) 15, 71, 81, 404
HinP1I GCGC 4 cut(s) 15, 71, 81, 404
HinfI GANTC 3 cut(s) 39, 120, 746
HphI GGTGA 2 cut(s) 52, 278
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 3 cut(s) 102, 146, 868
Hpy188III TCNNGA 4 cut(s) 90, 109, 247, 750
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 3 cut(s) 5, 220, 257
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 9 cut(s) 522, 554, 621, 627, 698, 733, 811, 845, 878
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 103, 546, 633, 689, 695, 808
HpyF3I CTNAG 1 cut(s) 867
HspAI GCGC 4 cut(s) 15, 71, 81, 404
KpnI GGTACC 1 cut(s) 565
Kzo9I GATC 5 cut(s) 57, 159, 219, 249, 870
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 6 cut(s) 60, 679, 682, 701, 795, 857
LweI GCATC 3 cut(s) 415, 658, 720
MaeI CTAG 6 cut(s) 36, 216, 303, 369, 411, 750
MalI GATC 5 cut(s) 59, 161, 221, 251, 872
MboI GATC 5 cut(s) 57, 159, 219, 249, 870
MboII GAAGA 5 cut(s) 160, 166, 169, 583, 849
MflI RGATCY 2 cut(s) 219, 870
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 4 cut(s) 241, 517, 757, 833
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 9 cut(s) 176, 182, 312, 365, 574, 637, 647, 806, 883
MseI TTAA 3 cut(s) 420, 515, 837
MspA1I CMGCKG 2 cut(s) 65, 692
MspCI CTTAAG 1 cut(s) 419
MspR9I CCNGG 4 cut(s) 22, 44, 382, 707
MvaI CCWGG 4 cut(s) 22, 44, 382, 707
MvnI CGCG 4 cut(s) 17, 71, 81, 86
MwoI GCNNNNNNNGC 7 cut(s) 26, 103, 546, 633, 689, 695, 808
NdeII GATC 5 cut(s) 57, 159, 219, 249, 870
NlaIV GGNNCC 3 cut(s) 416, 470, 563
PfeI GAWTC 2 cut(s) 120, 746
PflMI CCANNNNNTGG 2 cut(s) 115, 343
PkrI GCNGC 9 cut(s) 19, 50, 75, 85, 691, 694, 697, 810, 847
Ple19I CGATCG 1 cut(s) 252
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 4 cut(s) 20, 42, 380, 705
PspGI CCWGG 4 cut(s) 20, 42, 380, 705
PspN4I GGNNCC 3 cut(s) 416, 470, 563
PspPI GGNCC 1 cut(s) 415
PspPPI RGGWCCY 1 cut(s) 415
PstI CTGCAG 1 cut(s) 629
PstNI CAGNNNCTG 2 cut(s) 115, 695
PsuI RGATCY 2 cut(s) 219, 870
PvuI CGATCG 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 323, 563
RsaNI GTAC 2 cut(s) 322, 562
SaqAI TTAA 3 cut(s) 420, 515, 837
SatI GCNGC 9 cut(s) 18, 49, 74, 84, 690, 693, 696, 809, 846
Sau3AI GATC 5 cut(s) 57, 159, 219, 249, 870
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 4 cut(s) 22, 44, 382, 707
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 3 cut(s) 415, 658, 720
SfcI CTRYAG 2 cut(s) 398, 625
SinI GGWCC 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 419, 638, 797
SmoI CTYRAG 3 cut(s) 419, 638, 797
Sse9I AATT 4 cut(s) 241, 517, 757, 833
SsiI CCGC 5 cut(s) 17, 33, 63, 74, 84
SspMI CTAG 6 cut(s) 36, 216, 303, 369, 411, 750
StyD4I CCNGG 4 cut(s) 20, 42, 380, 705
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 123
TasI AATT 4 cut(s) 241, 517, 757, 833
TauI GCSGC 3 cut(s) 20, 76, 86
TfiI GAWTC 2 cut(s) 120, 746
Tru1I TTAA 3 cut(s) 420, 515, 837
Tru9I TTAA 3 cut(s) 420, 515, 837
TscAI CASTG 4 cut(s) 120, 265, 482, 684
TseI GCWGC 6 cut(s) 48, 689, 692, 695, 808, 845
TspDTI ATGAA 4 cut(s) 471, 674, 759, 791
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 4 cut(s) 120, 265, 482, 684
Van91I CCANNNNNTGG 2 cut(s) 115, 343
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 3 cut(s) 214, 422, 641
XbaI TCTAGA 1 cut(s) 749
XmaJI CCTAGG 1 cut(s) 410
XspI CTAG 6 cut(s) 36, 216, 303, 369, 411, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.