Rmu_co8145792.1_g000001
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8145792.1
OG0001331
Physical Location & Seq
Forward (+)
1 .. 645
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8145792.1_g000001.1.cds

Sequence Viewer

Length: 502 bp
cctatttctttgaagccagacttgggtcctaagacatacatcgcttatggtactatggaggagcttggtagaggagattcagtaacgaaactgcattgtgacatctctgatgcagttaatgtgctgactcatgcaactgaagtaaagatccctccagggcagggtaaaatcattgacagattacagaagaaatatgaagctgaagatgaaataattgaaggaacttcatgtaatgacgaacactttgagccttctaatgtaacacaagacgtgaatttggtccttgggaccgatccctcgcagccaaaaacttcaggaaatcttatcaacagaaaagagtgcatggagagttcagattcaattagaagtagtcaaagtgattataaatcagacgttgcatatggaggcgccgtttgggacattttccgtcggcaagatgtacccaagttaacagaatacctgttaaagcatcagaaagaatttcgccacattagtaatcttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

167

Amino Acids

18.69

Weight (kDa)

5.23

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 407
AclWI GGATC 2 cut(s) 142, 287
AcsI RAATTY 2 cut(s) 274, 479
AcuI CTGAAG 3 cut(s) 159, 222, 297
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 52, 441
AfiI CCNNNNNNNGG 2 cut(s) 23, 161
AgsI TTSAA 3 cut(s) 13, 218, 360
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 64, 200
AluI AGCT 2 cut(s) 64, 200
AlwI GGATC 2 cut(s) 142, 287
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 2 cut(s) 274, 479
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 26, 280, 288
AvaII GGWCC 3 cut(s) 26, 280, 288
BanI GGYRCC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 313
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 411
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 3 cut(s) 26, 280, 288
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 26, 280, 288
BmiI GGNNCC 3 cut(s) 27, 289, 409
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 100, 478
BoxI GACNNNNGTC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 155, 283
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 396, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 161
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 155, 283
BseLI CCNNNNNNNGG 2 cut(s) 23, 161
BseRI GAGGAG 2 cut(s) 74, 87
BseXI GCAGC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 407
BslFI GGGAC 2 cut(s) 301, 431
BslI CCNNNNNNNGG 2 cut(s) 23, 161
BsmFI GGGAC 2 cut(s) 301, 431
Bsp143I GATC 2 cut(s) 147, 292
BspLI GGNNCC 3 cut(s) 27, 289, 409
BspPI GGATC 2 cut(s) 142, 287
BspT107I GGYRCC 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 155, 283
BssMI GATC 2 cut(s) 147, 292
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 2 cut(s) 150, 295
BstMBI GATC 2 cut(s) 147, 292
BstNI CCWGG 1 cut(s) 156
BstPAI GACNNNNGTC 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 271
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 26, 280, 288
Csp6I GTAC 2 cut(s) 51, 440
CviAII CATG 3 cut(s) 131, 228, 343
CviJI RGCY 5 cut(s) 16, 64, 200, 250, 304
CviKI_1 RGCY 5 cut(s) 16, 64, 200, 250, 304
CviQI GTAC 2 cut(s) 51, 440
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 409
DpnI GATC 2 cut(s) 149, 294
DpnII GATC 2 cut(s) 147, 292
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 3 cut(s) 26, 280, 288
Eco57I CTGAAG 3 cut(s) 159, 222, 297
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 3 cut(s) 134, 231, 346
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 301, 431
FatI CATG 3 cut(s) 130, 227, 342
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
GlaI GCGC 1 cut(s) 409
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 411
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 3 cut(s) 134, 231, 346
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 3 cut(s) 77, 127, 356
HpaI GTTAAC 1 cut(s) 450
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 4 cut(s) 109, 355, 391, 474
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 2 cut(s) 212, 261
HpyCH4IV ACGT 2 cut(s) 270, 393
HpyCH4V TGCA 5 cut(s) 94, 113, 134, 342, 398
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 2 cut(s) 270, 393
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 3 cut(s) 134, 231, 346
HspAI GCGC 1 cut(s) 408
KasI GGCGCC 1 cut(s) 407
KspAI GTTAAC 1 cut(s) 450
Kzo9I GATC 2 cut(s) 147, 292
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 30, 141, 146, 168, 300, 473
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 100, 478
MaeII ACGT 2 cut(s) 270, 393
MaeIII GTNAC 3 cut(s) 82, 98, 259
MalI GATC 2 cut(s) 149, 294
MboI GATC 2 cut(s) 147, 292
MboII GAAGA 3 cut(s) 199, 215, 491
MflI RGATCY 1 cut(s) 147
MluCI AATT 4 cut(s) 213, 274, 360, 479
Mly113I GGCGCC 1 cut(s) 408
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 5 cut(s) 52, 65, 162, 307, 398
MseI TTAA 3 cut(s) 117, 449, 464
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
NarI GGCGCC 1 cut(s) 408
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 147, 292
NlaIII CATG 3 cut(s) 134, 231, 346
NlaIV GGNNCC 3 cut(s) 27, 289, 409
NmuCI GTSAC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 77, 356
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 411
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 26
PshAI GACNNNNGTC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 27, 289, 409
PspPI GGNCC 3 cut(s) 26, 280, 288
PspPPI RGGWCCY 1 cut(s) 26
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 2 cut(s) 52, 441
RsaNI GTAC 2 cut(s) 51, 440
SaqAI TTAA 3 cut(s) 117, 449, 464
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 147, 292
Sau96I GGNCC 3 cut(s) 26, 280, 288
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 156
SetI ASST 5 cut(s) 66, 202, 273, 396, 462
SfaNI GCATC 2 cut(s) 100, 478
SfoI GGCGCC 1 cut(s) 409
SinI GGWCC 3 cut(s) 26, 280, 288
Sse9I AATT 4 cut(s) 213, 274, 360, 479
SspDI GGCGCC 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 2 cut(s) 273, 396
TaqII GACCGA 1 cut(s) 305
TasI AATT 4 cut(s) 213, 274, 360, 479
TfiI GAWTC 2 cut(s) 77, 356
Tru1I TTAA 3 cut(s) 117, 449, 464
Tru9I TTAA 3 cut(s) 117, 449, 464
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 210, 216, 222
TspGWI ACGGA 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 26, 280, 288
XapI RAATTY 2 cut(s) 274, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.