Rh1CG416800
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001331
Physical Location & Seq
Forward (+)
67784530 .. 67785405
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG416800.1

Sequence Viewer

Length: 876 bp
ATGGACAAATTCAACAGTGACAAATGCAATACATCCATTGTCAATTTCCACAGAAGCTGCCCCAATCCTGATTGTTCTTATGATCTCTGTGTCACTTGTTGTTGGGAACTAAGGAAAGGATGTCAGCTTGGAGGCAGTGAAGGGGAATCTTCTGGTCAACAGTTTTGTGAAGGAGTAAACAGTAAAGGTACAGTATCAGATGGCCAGATTCCTGAAAATGTGAATGGAAATATATTACAGAGCGTACCAGCAAATGAGTTCACAAATGATATATCTTCTGAGTTTCCTAGTTGGAAAGCAGAGGCTGATGGTAGGATTCCTTGTCCACCAAAAGCACTGGGAGGTTGTGGTACCCAGTTACTTGAACTCAGACGTATATTTGAAGCAGACTGGGTTGAAAAACTAATTTTCAGCTCCGAGGACCTCACTGTTCATTATCAACCATCAGATGTTGATTTTTCTCAAGGATGTTCTGCATGTCATTCTATCAGTTCTGCATGCAATGGTGTAAAAGCTTCCGAAGTGAGGCATGCAGCTGATAGACTGAACTGTCATGATAACTTCCTTTACTGCCCGGATTCTGTACATTTGGGAAACGATGACATTGAGCATTTTCAATTGCACTGGAGGAGAGGGGAACCAGTTGTAGTTAGAAATGTACTTGAAAAGGCTACTGGCCTTAGCTGGGAACCAATGGTAATGTGGAGGGCTTTTATTGGGGCAAAAAAAGTACTGAAAGAGGAGGCAGCGAAGGTCAAAGCCATTGATTGCCTTGATTGGTGCGAGGTATGTGTCCAATTTCAACAGGTTGAATGTGCAATTCACTCTTTCCTATCTGCCCTAGTTTTTAGTTTTCTATTTGTTATTGTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

291

Amino Acids

32.37

Weight (kDa)

5.12

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 549
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 6 cut(s) 190, 246, 352, 585, 660, 732
AfiI CCNNNNNNNGG 2 cut(s) 525, 685
AgsI TTSAA 8 cut(s) 13, 365, 383, 398, 617, 665, 803, 812
AluBI AGCT 6 cut(s) 57, 127, 414, 515, 536, 684
AluI AGCT 6 cut(s) 57, 127, 414, 515, 536, 684
AlwNI CAGNNNCTG 2 cut(s) 57, 305
AoxI GGCC 2 cut(s) 202, 676
ApeKI GCWGC 3 cut(s) 57, 533, 746
ApoI RAATTY 1 cut(s) 8
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 1 cut(s) 204
BanI GGYRCC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 44, 545, 758
BccI CCATC 3 cut(s) 194, 302, 451
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 2 cut(s) 288, 842
BisI GCNGC 3 cut(s) 58, 534, 747
BlsI GCNGC 3 cut(s) 59, 535, 748
BmcAI AGTACT 1 cut(s) 732
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 3 cut(s) 352, 639, 690
BmrFI CCNGG 1 cut(s) 575
BmrI ACTGGG 3 cut(s) 347, 349, 400
BmuI ACTGGG 3 cut(s) 347, 349, 400
BpmI CTGGAG 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 685
Bse1I ACTGG 6 cut(s) 342, 355, 395, 629, 641, 679
Bse3DI GCAATG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 32, 125, 473
BseLI CCNNNNNNNGG 2 cut(s) 525, 685
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 270, 382
BseNI ACTGG 6 cut(s) 342, 355, 395, 629, 641, 679
BseRI GAGGAG 2 cut(s) 643, 755
BseXI GCAGC 3 cut(s) 44, 545, 758
BseYI CCCAGC 1 cut(s) 684
BshFI GGCC 2 cut(s) 204, 678
BshNI GGYRCC 1 cut(s) 350
BsiSI CCGG 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 525, 685
BsnI GGCC 2 cut(s) 204, 678
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 1 cut(s) 82
BspANI GGCC 2 cut(s) 204, 678
BspCNI CTCAG 2 cut(s) 271, 381
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 3 cut(s) 352, 639, 690
BspT107I GGYRCC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 6 cut(s) 342, 355, 395, 629, 641, 679
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 6 cut(s) 17, 162, 182, 193, 430, 551
BstAUI TGTACA 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 499, 531
BstDEI CTNAG 4 cut(s) 110, 279, 368, 680
BstF5I GGATG 3 cut(s) 32, 125, 473
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstNSI RCATGY 3 cut(s) 480, 501, 533
BstSCI CCNGG 1 cut(s) 573
BstV1I GCAGC 3 cut(s) 44, 545, 758
BsuRI GGCC 2 cut(s) 204, 678
BtsCI GGATG 3 cut(s) 32, 125, 473
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 5 cut(s) 22, 142, 335, 426, 622
Cac8I GCNNGC 2 cut(s) 499, 531
CaiI CAGNNNCTG 2 cut(s) 57, 305
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 421
Csp6I GTAC 6 cut(s) 189, 245, 351, 584, 659, 731
CviAII CATG 4 cut(s) 477, 498, 530, 554
CviQI GTAC 6 cut(s) 189, 245, 351, 584, 659, 731
DdeI CTNAG 4 cut(s) 110, 279, 368, 680
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 549
DseDI GACNNNNNNGTC 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 421
FaeI CATG 4 cut(s) 480, 501, 533, 557
FaiI YATR 9 cut(s) 81, 233, 272, 377, 478, 499, 531, 555, 790
FatI CATG 4 cut(s) 476, 497, 529, 553
Fnu4HI GCNGC 3 cut(s) 58, 534, 747
FokI GGATG 3 cut(s) 19, 132, 480
Fsp4HI GCNGC 3 cut(s) 58, 534, 747
FspBI CTAG 2 cut(s) 288, 842
GluI GCNGC 3 cut(s) 58, 534, 747
GsaI CCCAGC 1 cut(s) 688
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 2 cut(s) 204, 678
HapII CCGG 1 cut(s) 575
Hin1II CATG 4 cut(s) 480, 501, 533, 557
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 513
HinfI GANTC 4 cut(s) 146, 208, 316, 578
HpaII CCGG 1 cut(s) 575
Hpy166II GTNNAC 4 cut(s) 158, 178, 261, 326
Hpy188I TCNGA 6 cut(s) 199, 280, 371, 418, 448, 520
Hpy188III TCNNGA 3 cut(s) 68, 212, 554
Hpy8I GTNNAC 4 cut(s) 158, 178, 261, 326
HpyAV CCTTC 3 cut(s) 134, 164, 745
HpyCH4III ACNGT 6 cut(s) 17, 162, 182, 193, 430, 551
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 7 cut(s) 27, 476, 497, 501, 533, 622, 818
HpyF3I CTNAG 4 cut(s) 110, 279, 368, 680
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 4 cut(s) 480, 501, 533, 557
KpnI GGTACC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 3 cut(s) 44, 545, 758
MaeI CTAG 2 cut(s) 288, 842
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 3 cut(s) 17, 91, 357
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 2 cut(s) 141, 267
MfeI CAATTG 1 cut(s) 617
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 6 cut(s) 8, 43, 405, 617, 797, 819
MluNI TGGCCA 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 272
Mox20I TGGCCA 1 cut(s) 204
MscI TGGCCA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 617
NciI CCSGG 1 cut(s) 575
NdeII GATC 1 cut(s) 82
NlaIII CATG 4 cut(s) 480, 501, 533, 557
NlaIV GGNNCC 3 cut(s) 352, 639, 690
NmuCI GTSAC 2 cut(s) 17, 91
NspI RCATGY 3 cut(s) 480, 501, 533
PaeI GCATGC 2 cut(s) 501, 533
PagI TCATGA 1 cut(s) 553
PfeI GAWTC 4 cut(s) 146, 208, 316, 578
PkrI GCNGC 3 cut(s) 59, 535, 748
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 684
PspN4I GGNNCC 3 cut(s) 352, 639, 690
PspPI GGNCC 1 cut(s) 421
PspPPI RGGWCCY 1 cut(s) 421
PstNI CAGNNNCTG 2 cut(s) 57, 305
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 6 cut(s) 190, 246, 352, 585, 660, 732
RsaNI GTAC 6 cut(s) 189, 245, 351, 584, 659, 731
SatI GCNGC 3 cut(s) 58, 534, 747
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 421
ScaI AGTACT 1 cut(s) 732
ScrFI CCNGG 1 cut(s) 575
SinI GGWCC 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
SphI GCATGC 2 cut(s) 501, 533
Sse9I AATT 6 cut(s) 8, 43, 405, 617, 797, 819
SspMI CTAG 2 cut(s) 288, 842
StyD4I CCNGG 1 cut(s) 573
TaaI ACNGT 6 cut(s) 17, 162, 182, 193, 430, 551
TaiI ACGT 1 cut(s) 376
TasI AATT 6 cut(s) 8, 43, 405, 617, 797, 819
TatI WGTACW 3 cut(s) 583, 658, 730
TfiI GAWTC 4 cut(s) 146, 208, 316, 578
TscAI CASTG 5 cut(s) 22, 142, 342, 433, 629
TseFI GTSAC 2 cut(s) 17, 91
TseI GCWGC 3 cut(s) 57, 533, 746
Tsp45I GTSAC 2 cut(s) 17, 91
TspDTI ATGAA 1 cut(s) 422
TspRI CASTG 5 cut(s) 22, 142, 342, 433, 629
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 1 cut(s) 8
XceI RCATGY 3 cut(s) 480, 501, 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XspI CTAG 2 cut(s) 288, 842
ZrmI AGTACT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.