Rh5CG542800
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001331
Physical Location & Seq
Forward (+)
75785974 .. 75790007
4034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG542800.1

Sequence Viewer

Length: 564 bp
ATGAATCACAGTGACTTCCGTGCTCGGCAATTGAAGAACTCAGAACATACTGGGCAAAAAGTCTGTAAGAGACCTAGAGGGAGACCTAGGAAGTTTAGCAACCTACAGGCGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTATGGTGCCACCAGTGCTTACGAAATGACAGAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCCCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAATTACAACTGCAGAATATGCCTCAAGGAGTATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAACTCTGCCTCTCCTTAAGCATATTCAACAGGAGCAGAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGGTGTACAATTGACAGAAGAGGACCTCACGAGGTCTATACTAGAGGATGATGATCGAGTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

187

Amino Acids

22.14

Weight (kDa)

8.65

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 54 - 120 2.9e-07 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 2 cut(s) 174, 267
AccI GTMKAC 1 cut(s) 493
AfaI GTAC 2 cut(s) 269, 504
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 2 cut(s) 125, 443
AgsI TTSAA 2 cut(s) 34, 455
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 1 cut(s) 489
AluI AGCT 1 cut(s) 489
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 64, 76
Ama87I CYCGRG 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 267
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 2 cut(s) 121, 520
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 121, 520
AvrII CCTAGG 1 cut(s) 86
BanI GGYRCC 2 cut(s) 174, 267
BauI CACGAG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 64, 76
BfaI CTAG 3 cut(s) 75, 87, 539
BfmI CTRYAG 2 cut(s) 104, 331
BfrI CTTAAG 2 cut(s) 125, 443
BglII AGATCT 1 cut(s) 467
BlnI CCTAGG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 2 cut(s) 121, 520
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 121, 520
BmiI GGNNCC 3 cut(s) 122, 176, 269
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 2 cut(s) 64, 76
BsaJI CCNNGG 3 cut(s) 86, 116, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 55, 181
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 86, 116, 117
BseGI GGATG 2 cut(s) 112, 550
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 55, 181
BseYI CCCAGC 1 cut(s) 368
BshNI GGYRCC 2 cut(s) 174, 267
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 64, 76
BsmFI GGGAC 1 cut(s) 134
Bso31I GGTCTC 2 cut(s) 64, 76
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 2 cut(s) 467, 550
BspCNI CTCAG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 122, 176, 269
BspMAI CTGCAG 1 cut(s) 335
BspT107I GGYRCC 2 cut(s) 174, 267
BspTI CTTAAG 2 cut(s) 125, 443
BspTNI GGTCTC 2 cut(s) 64, 76
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 2 cut(s) 55, 181
BssECI CCNNGG 3 cut(s) 86, 116, 117
BssMI GATC 2 cut(s) 467, 550
BssNAI GTATAC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 510
BstAFI CTTAAG 2 cut(s) 125, 443
BstAPI GCANNNNNTGC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 502
BstBAI YACGTR 1 cut(s) 497
BstDEI CTNAG 1 cut(s) 40
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 112, 550
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 2 cut(s) 470, 553
BstMAI GTCTC 2 cut(s) 64, 76
BstMBI GATC 2 cut(s) 467, 550
BstMWI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 104, 331
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BstZ17I GTATAC 1 cut(s) 494
BtsCI GGATG 2 cut(s) 112, 550
BtsIMutI CAGTG 2 cut(s) 16, 188
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 121, 520
Csp6I GTAC 2 cut(s) 268, 503
CviAII CATG 1 cut(s) 374
CviJI RGCY 2 cut(s) 368, 489
CviKI_1 RGCY 2 cut(s) 368, 489
CviQI GTAC 2 cut(s) 268, 503
DdeI CTNAG 1 cut(s) 40
DpnI GATC 2 cut(s) 469, 552
DpnII GATC 2 cut(s) 467, 550
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 86
Eco31I GGTCTC 2 cut(s) 64, 76
Eco47I GGWCC 2 cut(s) 121, 520
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoO109I RGGNCCY 2 cut(s) 121, 520
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 377
FaiI YATR 9 cut(s) 48, 172, 249, 293, 340, 375, 450, 494, 536
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 373
FblI GTMKAC 1 cut(s) 493
FokI GGATG 2 cut(s) 99, 557
FspBI CTAG 3 cut(s) 75, 87, 539
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 377
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 3 cut(s) 494, 503, 559
Hpy188I TCNGA 2 cut(s) 43, 472
Hpy188III TCNNGA 1 cut(s) 526
Hpy8I GTNNAC 3 cut(s) 494, 503, 559
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 4 cut(s) 228, 260, 333, 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 1 cut(s) 377
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 467, 550
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 8 cut(s) 36, 92, 103, 116, 130, 194, 354, 443
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 75, 87, 539
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 469, 552
MboI GATC 2 cut(s) 467, 550
MboII GAAGA 4 cut(s) 46, 289, 389, 527
MfeI CAATTG 2 cut(s) 29, 506
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 6 cut(s) 29, 223, 322, 398, 473, 506
MnlI CCTC 8 cut(s) 71, 280, 353, 447, 511, 522, 533, 535
MseI TTAA 4 cut(s) 126, 221, 396, 444
MspCI CTTAAG 2 cut(s) 125, 443
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 29, 506
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 183, 252, 339, 418
NdeII GATC 2 cut(s) 467, 550
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 3 cut(s) 122, 176, 269
NmeAIII GCCGAG 1 cut(s) 4
NmuCI GTSAC 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 117
PfeI GAWTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 497
PpuMI RGGWCCY 2 cut(s) 121, 520
Psp5II RGGWCCY 2 cut(s) 121, 520
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 368
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 122, 176, 269
PspPI GGNCC 2 cut(s) 121, 520
PspPPI RGGWCCY 2 cut(s) 121, 520
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 2 cut(s) 269, 504
RsaNI GTAC 2 cut(s) 268, 503
SaqAI TTAA 4 cut(s) 126, 221, 396, 444
Sau3AI GATC 2 cut(s) 467, 550
Sau96I GGNCC 2 cut(s) 121, 520
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 25
SetI ASST 8 cut(s) 76, 88, 105, 126, 491, 499, 525, 533
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 2 cut(s) 104, 331
SinI GGWCC 2 cut(s) 121, 520
SmlI CTYRAG 3 cut(s) 125, 344, 443
SmoI CTYRAG 3 cut(s) 125, 344, 443
Sse9I AATT 6 cut(s) 29, 223, 322, 398, 473, 506
SspI AATATT 1 cut(s) 394
SspMI CTAG 3 cut(s) 75, 87, 539
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 553
TasI AATT 6 cut(s) 29, 223, 322, 398, 473, 506
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 4 cut(s) 126, 221, 396, 444
Tru9I TTAA 4 cut(s) 126, 221, 396, 444
TscAI CASTG 2 cut(s) 16, 188
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 17, 390
TspGWI ACGGA 1 cut(s) 8
TspRI CASTG 2 cut(s) 16, 188
Vha464I CTTAAG 2 cut(s) 125, 443
VpaK11BI GGWCC 2 cut(s) 121, 520
XagI CCTNNNNNAGG 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 3 cut(s) 75, 87, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.