Rh4BG088900

JmjC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
15352378 .. 15352850
473 bp
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UTR
Exon/CDS
Intron
Rh4BG088900.1

Sequence Viewer

Length: 360 bp
ATGGGTGGTATGGTCTTATCATATCCAGCCATATTCTCTCAGAGCCATAACGGGTTCAGTCTCGCGTTCTCTAGGATCTCTCACAATCTAAACCCCAATTTCCCGATCGGGTTCAGTGAGGATGAAATAGAGATGGCAAATGGGAAAGAGATGAGTTCCAGTGAGTTTGTGGAGAGGTACTTGGAGAATAACCAGCCTGTGGTGCTCACAGGTCTCATGGATGATTGGAGGGCTTGCAGAGATTGGGTCACTCATGAAGGCAATCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAGATCCAAAGTCCAGCCCTACCTCACTGGCAAAAGGCTAAGCAAAGAGAAGAAGGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.54

Weight (kDa)

6.41

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 1 cut(s) 65
AclWI GGATC 2 cut(s) 83, 294
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 65, 218
AlwI GGATC 2 cut(s) 83, 294
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 65, 218
BfaI CTAG 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 354
Bpu1102I GCTNAGC 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 159, 328
BseGI GGATG 2 cut(s) 127, 226
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 2 cut(s) 159, 328
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 65, 218
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 75, 105, 299
Bsp1720I GCTNAGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 2 cut(s) 83, 294
BspTNI GGTCTC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 159, 328
BssMI GATC 3 cut(s) 75, 105, 299
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 39, 335
BstF5I GGATG 2 cut(s) 127, 226
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 78, 108, 302
BstMAI GTCTC 2 cut(s) 65, 218
BstMBI GATC 3 cut(s) 75, 105, 299
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 2 cut(s) 75, 299
BstYI RGATCY 2 cut(s) 75, 299
BtsCI GGATG 2 cut(s) 127, 226
BtsIMutI CAGTG 3 cut(s) 121, 166, 321
Cac8I GCNNGC 1 cut(s) 235
CciI TCATGA 1 cut(s) 253
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 217, 254
CviJI RGCY 6 cut(s) 29, 45, 196, 233, 313, 334
CviKI_1 RGCY 6 cut(s) 29, 45, 196, 233, 313, 334
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 39, 335
DpnI GATC 3 cut(s) 77, 107, 301
DpnII GATC 3 cut(s) 75, 105, 299
Eco31I GGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 220, 257
FaiI YATR 6 cut(s) 11, 22, 32, 48, 218, 255
FatI CATG 2 cut(s) 216, 253
FokI GGATG 2 cut(s) 134, 233
FspBI CTAG 1 cut(s) 72
Hin1II CATG 2 cut(s) 220, 257
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 103, 254
HpyAV CCTTC 2 cut(s) 251, 343
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 39, 335
Hsp92II CATG 2 cut(s) 220, 257
Kzo9I GATC 3 cut(s) 75, 105, 299
LpnPI CCDG 7 cut(s) 39, 172, 195, 206, 210, 309, 323
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 77, 107, 301
MboI GATC 3 cut(s) 75, 105, 299
MboII GAAGA 3 cut(s) 263, 309, 358
MflI RGATCY 2 cut(s) 75, 299
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 97, 275
MnlI CCTC 4 cut(s) 112, 168, 222, 329
MseI TTAA 1 cut(s) 358
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 3 cut(s) 75, 105, 299
NlaIII CATG 2 cut(s) 220, 257
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 247
PagI TCATGA 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 199
Ple19I CGATCG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 2 cut(s) 75, 299
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 358
Sau3AI GATC 3 cut(s) 75, 105, 299
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 179, 214, 321, 354
Sse9I AATT 2 cut(s) 97, 275
SspMI CTAG 1 cut(s) 72
TasI AATT 2 cut(s) 97, 275
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 3 cut(s) 121, 166, 328
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 138, 270
TspRI CASTG 3 cut(s) 121, 166, 328
Van91I CCANNNNNTGG 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.