Rorug01G0422600
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001331
Physical Location & Seq
Forward (+)
52354965 .. 52357278
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0422600.1

Sequence Viewer

Length: 717 bp
ATGGTGAGAGTCAGCGTTTTGAACGATGCTCTGAAGAGCATGTACAACGCAAAGAAGAGGGGCAAGAGACAGTTCATGATCAGGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTATATTGGAGAGTTTGAGTATGTTGATGACCACAGATCTGGAAAGATTGTGGTTGAACTCAATGGGAGGCTGAACAAGTGTGGTGTTATCAGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCTGGACGGCTAGACTTCTTCCGTCAAGACAGTATGACAAAGAAAATGTTGTAGAAGCAAACTTTGGAGAACTTGAAAAAGAGAGATGTAACAGTAACACTTCCGATCTTTCGTTCATTCACACTCTGAATACCAACACTAACCTTCTGGTGTGCAAAGCAGAATACTACCATCAGTGTGGTGAATATCAAAAATGCTTTGAACTTACCTCTTTCCTACTTGAAAAAGACACTTTCCATCTCAAAAGTACATTAGTGCATCTAGCAGCTGCGATGGAACTTGGGAATTCAAATGAGCTCTATCTTATGGCATGCAATTTAGTGAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTTCTGTTGGCTGTTACTACTATTGTATAAAAAAGTATGATCAGTCATGCCGTTATTTCAGTAAGGCTACCAATGTCGATGGAAACTTTCCACCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

238

Amino Acids

27.41

Weight (kDa)

8.74

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 7 - 102 3.8e-10 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 44, 511
AgsI TTSAA 7 cut(s) 22, 191, 260, 338, 464, 485, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 2 cut(s) 530, 559
AluI AGCT 2 cut(s) 530, 559
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 527, 530
ApoI RAATTY 1 cut(s) 547
AsuHPI GGTGA 2 cut(s) 16, 455
BanII GRGCYC 1 cut(s) 561
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 2 cut(s) 517, 539
BccI CCATC 4 cut(s) 441, 507, 529, 689
BceAI ACGGC 2 cut(s) 285, 651
BclI TGATCA 2 cut(s) 78, 655
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 273, 524
BglII AGATCT 1 cut(s) 170
BisI GCNGC 2 cut(s) 528, 531
BlsI GCNGC 2 cut(s) 529, 532
BmsI GCATC 2 cut(s) 16, 529
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 517, 539
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 561
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 4 cut(s) 78, 170, 367, 655
BspANI GGCC 1 cut(s) 85
BspHI TCATGA 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 4 cut(s) 78, 170, 367, 655
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 72, 134, 294, 356
Bst6I CTCTTC 2 cut(s) 29, 50
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 574
BstKTI GATC 4 cut(s) 81, 173, 370, 658
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 78, 170, 367, 655
BstNSI RCATGY 2 cut(s) 43, 576
BstV1I GCAGC 2 cut(s) 517, 539
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 2 cut(s) 173, 440
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 548
BtsIMutI CAGTG 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 574
CciI TCATGA 1 cut(s) 75
Csp6I GTAC 2 cut(s) 43, 510
CviAII CATG 6 cut(s) 40, 76, 573, 612, 663, 714
CviJI RGCY 9 cut(s) 85, 205, 264, 272, 530, 559, 605, 627, 683
CviKI_1 RGCY 9 cut(s) 85, 205, 264, 272, 530, 559, 605, 627, 683
CviQI GTAC 2 cut(s) 43, 510
DpnI GATC 4 cut(s) 80, 172, 369, 657
DpnII GATC 4 cut(s) 78, 170, 367, 655
Eam1104I CTCTTC 2 cut(s) 29, 50
EarI CTCTTC 2 cut(s) 29, 50
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 53
EcoICRI GAGCTC 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 6 cut(s) 43, 79, 576, 615, 666, 717
FatI CATG 6 cut(s) 39, 75, 572, 611, 662, 713
FbaI TGATCA 2 cut(s) 78, 655
Fnu4HI GCNGC 2 cut(s) 528, 531
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 2 cut(s) 528, 531
FspBI CTAG 2 cut(s) 273, 524
GluI GCNGC 2 cut(s) 528, 531
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 6 cut(s) 43, 79, 576, 615, 666, 717
HinfI GANTC 1 cut(s) 9
HphI GGTGA 2 cut(s) 16, 455
Hpy188I TCNGA 3 cut(s) 33, 367, 390
Hpy188III TCNNGA 3 cut(s) 76, 174, 288
HpyAV CCTTC 4 cut(s) 96, 254, 416, 580
HpyCH4III ACNGT 4 cut(s) 72, 134, 294, 356
HpyCH4V TGCA 5 cut(s) 124, 417, 520, 576, 713
Hsp92II CATG 6 cut(s) 43, 79, 576, 615, 666, 717
Ksp22I TGATCA 2 cut(s) 78, 655
Kzo9I GATC 4 cut(s) 78, 170, 367, 655
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 67, 159, 250, 395
Lsp1109I GCAGC 2 cut(s) 517, 539
LweI GCATC 2 cut(s) 16, 529
MaeI CTAG 2 cut(s) 273, 524
MaeIII GTNAC 3 cut(s) 350, 356, 629
MalI GATC 4 cut(s) 80, 172, 369, 657
MboI GATC 4 cut(s) 78, 170, 367, 655
MboII GAAGA 3 cut(s) 46, 67, 272
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 2 cut(s) 547, 577
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 5 cut(s) 51, 195, 240, 481, 606
MslI CAYNNNNRTG 2 cut(s) 438, 712
MspA1I CMGCKG 1 cut(s) 530
NdeII GATC 4 cut(s) 78, 170, 367, 655
NlaIII CATG 6 cut(s) 43, 79, 576, 615, 666, 717
NspI RCATGY 2 cut(s) 43, 576
PaeI GCATGC 1 cut(s) 576
PagI TCATGA 1 cut(s) 75
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 529, 532
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 561
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 2 cut(s) 44, 511
RsaNI GTAC 2 cut(s) 43, 510
RseI CAYNNNNRTG 2 cut(s) 438, 712
SacI GAGCTC 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 2 cut(s) 528, 531
Sau3AI GATC 4 cut(s) 78, 170, 367, 655
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 561
SetI ASST 6 cut(s) 99, 408, 473, 532, 561, 712
SfaNI GCATC 2 cut(s) 16, 529
SmiMI CAYNNNNRTG 2 cut(s) 438, 712
SphI GCATGC 1 cut(s) 576
Sse9I AATT 2 cut(s) 547, 577
SseBI AGGCCT 1 cut(s) 85
SspMI CTAG 2 cut(s) 273, 524
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 4 cut(s) 72, 134, 294, 356
TaqI TCGA 1 cut(s) 693
TasI AATT 2 cut(s) 547, 577
TatI WGTACW 2 cut(s) 42, 509
TscAI CASTG 1 cut(s) 443
TseI GCWGC 2 cut(s) 527, 530
TspDTI ATGAA 2 cut(s) 64, 367
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 443
XapI RAATTY 1 cut(s) 547
XceI RCATGY 2 cut(s) 43, 576
XspI CTAG 2 cut(s) 273, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.