Rmu_co8458399.1_g000001
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8458399.1
Physical Location & Seq
Reverse (-)
2 .. 1053
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8458399.1_g000001.1.cds

Sequence Viewer

Length: 1052 bp
atggagaaggggaagggtttaagggaggttgggaatggtggaaatgagggggcagctgaaatgggtgagcagagaagaaagagagttgcgggaaaaagtgacgaaattttggggagtggggatctgggtattggtggtgaggagtggtttggcggtggaaatggcggtggtggaatgagtgttggtgatgaaattgccaagctttttggtgaagtgggtggtggtggtggtggaagtgacctgggtgggcttgatggtggaggtgtgagcttctggggtggtggaaatggtggaggggctggggttggtggtgggtttggtggtgttcaaggttttggtcttgaagaaattcaaggtgggtttggtgagaaatttcagtttggtggaggtttgggtggtctggatggtagtggaggcattcacttgtggggaaatgaaggccttggcggtgaaggaatgcaaggcctgtttgatagaaatggtcagttttggggtggtgaggcctctggtaatgttgatagtcaaggagttcagggctgtttgagtgtaaatgcatctggaaatggaggtgaaatcggggaatgtcaggagggaaatggtgaagatagaagtggaggtggtgctcaagggtcgaaaggtaagcgtgggaggccgaaaggatcaaagaataagaagaagaatattggagctgaagagggaattgtagggttgagtggaattactggtgtcaatgtaggtggagaagagagtgtaacaccgaagaggaagctaggtcgaccaaagggtgccaagaataaacagaaggctcttgcaagtgatggaaatgggggtgtgcctgatgggggtgaagaaagtaaggcagtggttgggaatgagagtgttgggccaaagagaaaggttagtcgaccaaagggtctgaagtccaagagaaatcgtacagttgtggaagatgatggagtgtcaggagacttgggggctgttgctgagggaattgagatacctgttccgagccagcctactggttcagagaaagaaatgcttcaagttgggca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

34.37

Weight (kDa)

5.25

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 912
AccB1I GGYRCC 1 cut(s) 785
AccI GTMKAC 2 cut(s) 775, 904
AciI CCGC 4 cut(s) 89, 153, 165, 447
AclWI GGATC 2 cut(s) 129, 667
AcsI RAATTY 3 cut(s) 105, 348, 371
AcuI CTGAAG 2 cut(s) 711, 938
AfaI GTAC 1 cut(s) 937
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 4 cut(s) 329, 344, 353, 1043
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 5 cut(s) 56, 202, 270, 689, 769
AluI AGCT 5 cut(s) 56, 202, 270, 689, 769
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 960
AlwI GGATC 2 cut(s) 129, 667
AoxI GGCC 5 cut(s) 439, 463, 501, 650, 884
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 3 cut(s) 105, 348, 371
Asp700I GAANNNNTTC 2 cut(s) 348, 1038
AspS9I GGNCC 1 cut(s) 884
BanI GGYRCC 1 cut(s) 785
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 1 cut(s) 65
BccI CCATC 5 cut(s) 248, 398, 812, 833, 947
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 960
BfaI CTAG 1 cut(s) 770
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 884
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 563
Bpu10I CCTNAGC 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 241, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse1I ACTGG 2 cut(s) 727, 1024
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 241, 442
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 842
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 2 cut(s) 727, 1024
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 299
BshFI GGCC 5 cut(s) 441, 465, 503, 652, 886
BshNI GGYRCC 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 625
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 1 cut(s) 960
BsmI GAATGC 2 cut(s) 417, 462
BsnI GGCC 5 cut(s) 441, 465, 503, 652, 886
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 2 cut(s) 121, 659
BspACI CCGC 4 cut(s) 89, 153, 165, 447
BspANI GGCC 5 cut(s) 441, 465, 503, 652, 886
BspCNI CTCAG 1 cut(s) 976
BspLI GGNNCC 1 cut(s) 787
BspPI GGATC 2 cut(s) 129, 667
BspT107I GGYRCC 1 cut(s) 785
BsrI ACTGG 2 cut(s) 727, 1024
BssECI CCNNGG 2 cut(s) 241, 442
BssMI GATC 2 cut(s) 121, 659
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 940
Bst6I CTCTTC 3 cut(s) 687, 738, 755
BstC8I GCNNGC 1 cut(s) 1013
BstDEI CTNAG 1 cut(s) 984
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 2 cut(s) 124, 662
BstMAI GTCTC 1 cut(s) 960
BstMBI GATC 2 cut(s) 121, 659
BstMWI GCNNNNNNNGC 1 cut(s) 649
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 1019
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 5 cut(s) 441, 465, 503, 652, 886
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 1 cut(s) 867
Cac8I GCNNGC 1 cut(s) 1013
Cfr13I GGNCC 1 cut(s) 884
Csp6I GTAC 1 cut(s) 936
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviQI GTAC 1 cut(s) 936
DdeI CTNAG 1 cut(s) 984
DpnI GATC 2 cut(s) 123, 661
DpnII GATC 2 cut(s) 121, 659
DrdI GACNNNNNNGTC 1 cut(s) 912
DseDI GACNNNNNNGTC 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 687, 738, 755
EarI CTCTTC 3 cut(s) 687, 738, 755
Eco130I CCWWGG 1 cut(s) 442
Eco147I AGGCCT 3 cut(s) 441, 465, 503
Eco57I CTGAAG 2 cut(s) 711, 938
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 442
FalI AAGNNNNNCTT 1 cut(s) 1023
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 2 cut(s) 775, 904
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 770
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 5 cut(s) 441, 465, 503, 652, 886
HincII GTYRAC 2 cut(s) 776, 905
HindII GTYRAC 2 cut(s) 776, 905
HindIII AAGCTT 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 776, 905
Hpy188I TCNGA 3 cut(s) 918, 1008, 1027
Hpy188III TCNNGA 5 cut(s) 341, 401, 558, 587, 963
Hpy8I GTNNAC 2 cut(s) 776, 905
HpyAV CCTTC 4 cut(s) 7, 431, 446, 796
HpyCH4III ACNGT 1 cut(s) 940
HpyCH4V TGCA 3 cut(s) 460, 554, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 649
HpyF3I CTNAG 1 cut(s) 984
Kzo9I GATC 2 cut(s) 121, 659
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 563
MaeI CTAG 1 cut(s) 770
MaeIII GTNAC 3 cut(s) 98, 236, 751
MalI GATC 2 cut(s) 123, 661
MboI GATC 2 cut(s) 121, 659
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 7 cut(s) 105, 192, 348, 371, 699, 717, 990
Mph1103I ATGCAT 1 cut(s) 556
MroXI GAANNNNTTC 2 cut(s) 348, 1038
MseI TTAA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 417, 462
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 649
NdeII GATC 2 cut(s) 121, 659
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 98, 236
NsiI ATGCAT 1 cut(s) 556
PceI AGGCCT 3 cut(s) 441, 465, 503
PctI GAATGC 2 cut(s) 417, 462
PdmI GAANNNNTTC 2 cut(s) 348, 1038
PkrI GCNGC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 1 cut(s) 884
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 937
RsaNI GTAC 1 cut(s) 936
SalI GTCGAC 2 cut(s) 774, 903
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 121, 659
Sau96I GGNCC 1 cut(s) 884
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 7 cut(s) 105, 192, 348, 371, 699, 717, 990
SseBI AGGCCT 3 cut(s) 441, 465, 503
SsiI CCGC 4 cut(s) 89, 153, 165, 447
SspI AATATT 1 cut(s) 682
SspMI CTAG 1 cut(s) 770
StuI AGGCCT 3 cut(s) 441, 465, 503
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 940
TaqI TCGA 3 cut(s) 632, 775, 904
TasI AATT 7 cut(s) 105, 192, 348, 371, 699, 717, 990
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 867
TseFI GTSAC 2 cut(s) 98, 236
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 98, 236
TspDTI ATGAA 2 cut(s) 204, 450
TspRI CASTG 1 cut(s) 867
XapI RAATTY 3 cut(s) 105, 348, 371
XmiI GTMKAC 2 cut(s) 775, 904
XmnI GAANNNNTTC 2 cut(s) 348, 1038
XspI CTAG 1 cut(s) 770
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.