RLG00000023713
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001331
Physical Location & Seq
Reverse (-)
27365548 .. 27367409
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023713

Sequence Viewer

Length: 762 bp
ATGGCAAATGGGAAAGCGATGAGTTCCAGTGAGTTTGTGGAGAGGTACTTGGAGAATAACCAGCCTGTGGTCTCTTACATACTGGGCAAAAAGTCTGTAAGAGACCTAGAGGGAGACCTAGGAAGTTTAGCAACCTACAGGCGCATCCCAGGGACCTTAAGCAGGGAATATCTACTGATACATTGGTACCCCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAACTGCAACTGCAGAATATGCCTGAAGGAGTATTTAGTTGTGATGGCTGGGCATGAAGAAACAGATACGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAACTCTGCCTCTCCTTAAGCATATTCAACGGGAGCAGAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGGTGTACAATTGACAGAAGAGGACCTCACGAGGTCTATACTAGAGGATGATGATCGAGTTTACTGGATGGAAGAGGTTGAAAACCATTTTAGTCTTATTTTCCTTTATAGGTATAAGAAAGTTGGGTACTTGGATACTGATGTTGGGCAACTTGAGTTTAGTCCTCCTGGGTTTCTATCTCTCCCTGTGCTACGAGTTTTGGTTGGAGTTTTAACTTTTTGGTGGCCAACTGGTCATAGAGTGCTGATCAACATGGTTAAGCCTTTCACAAAGGATGATATGTGCCATTGTTTTGGTTGCCTGTTTCTCATGAGGTTTGATGATTACTTTCAGCATTTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

254

Amino Acids

29.68

Weight (kDa)

5.58

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 67
AccI GTMKAC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 641
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 4 cut(s) 47, 188, 423, 545
AfiI CCNNNNNNNGG 2 cut(s) 67, 162
AflII CTTAAG 2 cut(s) 157, 362
AgsI TTSAA 2 cut(s) 374, 497
AjnI CCWGG 2 cut(s) 148, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 1 cut(s) 408
AluI AGCT 1 cut(s) 408
Alw26I GTCTC 3 cut(s) 76, 96, 108
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 641
Asp718I GGTACC 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 118
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 153, 439
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 153, 439
AvrII CCTAGG 1 cut(s) 118
BaeI ACNNNNGTAYC 6 cut(s) 170, 170, 203, 203, 543, 576
BalI TGGCCA 1 cut(s) 643
BanI GGYRCC 1 cut(s) 186
BauI CACGAG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 203
BccI CCATC 2 cut(s) 277, 478
BciT130I CCWGG 2 cut(s) 150, 585
BciVI GTATCC 1 cut(s) 544
BclI TGATCA 1 cut(s) 663
BcoDI GTCTC 3 cut(s) 76, 96, 108
BfaI CTAG 3 cut(s) 107, 119, 458
BfmI CTRYAG 2 cut(s) 136, 250
BfrI CTTAAG 2 cut(s) 157, 362
BfuI GTATCC 1 cut(s) 544
BglII AGATCT 1 cut(s) 386
BlnI CCTAGG 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 150, 585
Bme18I GGWCC 2 cut(s) 153, 439
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 153, 439
BmiI GGNNCC 2 cut(s) 154, 188
BmrFI CCNGG 2 cut(s) 150, 585
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 590
BsaAI YACGTR 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 3 cut(s) 76, 96, 108
BsaJI CCNNGG 4 cut(s) 118, 148, 149, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 162
Bse1I ACTGG 4 cut(s) 27, 87, 485, 652
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 150, 585
BseDI CCNNGG 4 cut(s) 118, 148, 149, 584
BseGI GGATG 4 cut(s) 144, 469, 489, 697
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 2 cut(s) 67, 162
BseNI ACTGG 4 cut(s) 27, 87, 485, 652
BseYI CCCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 643
BshNI GGYRCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 67, 162
BsmAI GTCTC 3 cut(s) 76, 96, 108
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 643
Bso31I GGTCTC 3 cut(s) 76, 96, 108
BsoBI CYCGRG 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 421
Bsp143I GATC 3 cut(s) 386, 469, 663
BspANI GGCC 1 cut(s) 643
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 154, 188
BspMAI CTGCAG 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 186
BspTI CTTAAG 2 cut(s) 157, 362
BspTNI GGTCTC 3 cut(s) 76, 96, 108
BsrGI TGTACA 1 cut(s) 421
BsrI ACTGG 4 cut(s) 27, 87, 485, 652
BssECI CCNNGG 4 cut(s) 118, 148, 149, 584
BssMI GATC 3 cut(s) 386, 469, 663
BssNAI GTATAC 1 cut(s) 413
BssSI CACGAG 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 118
Bst1107I GTATAC 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 150, 585
Bst6I CTCTTC 2 cut(s) 429, 483
BstAFI CTTAAG 2 cut(s) 157, 362
BstAPI GCANNNNNTGC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 421
BstBAI YACGTR 1 cut(s) 416
BstENI CCTNNNNNAGG 1 cut(s) 160
BstF5I GGATG 4 cut(s) 144, 469, 489, 697
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 3 cut(s) 389, 472, 666
BstMAI GTCTC 3 cut(s) 76, 96, 108
BstMBI GATC 3 cut(s) 386, 469, 663
BstMWI GCNNNNNNNGC 2 cut(s) 258, 337
BstNI CCWGG 2 cut(s) 150, 585
BstSCI CCNGG 2 cut(s) 148, 583
BstSFI CTRYAG 2 cut(s) 136, 250
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 1 cut(s) 386
BstZ17I GTATAC 1 cut(s) 413
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 4 cut(s) 144, 469, 489, 697
BtsIMutI CAGTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 153, 439
Csp6I GTAC 4 cut(s) 46, 187, 422, 544
CviAII CATG 3 cut(s) 293, 670, 727
CviJI RGCY 5 cut(s) 64, 287, 408, 643, 679
CviKI_1 RGCY 5 cut(s) 64, 287, 408, 643, 679
CviQI GTAC 4 cut(s) 46, 187, 422, 544
DpnI GATC 3 cut(s) 388, 471, 665
DpnII GATC 3 cut(s) 386, 469, 663
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 429, 483
EarI CTCTTC 2 cut(s) 429, 483
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 3 cut(s) 76, 96, 108
Eco47I GGWCC 2 cut(s) 153, 439
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 160
EcoO109I RGGNCCY 2 cut(s) 153, 439
EcoRII CCWGG 2 cut(s) 148, 583
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 3 cut(s) 296, 673, 730
FaqI GGGAC 1 cut(s) 166
FatI CATG 3 cut(s) 292, 669, 726
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 1 cut(s) 412
FokI GGATG 4 cut(s) 131, 476, 496, 704
FspBI CTAG 3 cut(s) 107, 119, 458
GlaI GCGC 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 643
HhaI GCGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 296, 673, 730
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
Hpy166II GTNNAC 3 cut(s) 413, 422, 478
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 2 cut(s) 445, 727
Hpy8I GTNNAC 3 cut(s) 413, 422, 478
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 246, 252, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 337
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 3 cut(s) 296, 673, 730
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 3 cut(s) 386, 469, 663
LmnI GCTCC 1 cut(s) 379
LweI GCATC 1 cut(s) 153
MaeI CTAG 3 cut(s) 107, 119, 458
MaeII ACGT 1 cut(s) 415
MalI GATC 3 cut(s) 388, 471, 665
MboI GATC 3 cut(s) 386, 469, 663
MboII GAAGA 4 cut(s) 208, 308, 446, 500
MfeI CAATTG 1 cut(s) 425
MflI RGATCY 1 cut(s) 386
MlsI TGGCCA 1 cut(s) 643
MluCI AATT 3 cut(s) 317, 392, 425
MluNI TGGCCA 1 cut(s) 643
MmeI TCCRAC 1 cut(s) 601
Mox20I TGGCCA 1 cut(s) 643
MscI TGGCCA 1 cut(s) 643
MseI TTAA 6 cut(s) 158, 315, 363, 629, 675, 760
Msp20I TGGCCA 1 cut(s) 643
MspCI CTTAAG 2 cut(s) 157, 362
MspR9I CCNGG 2 cut(s) 150, 585
MunI CAATTG 1 cut(s) 425
MvaI CCWGG 2 cut(s) 150, 585
MwoI GCNNNNNNNGC 2 cut(s) 258, 337
NdeII GATC 3 cut(s) 386, 469, 663
NlaIII CATG 3 cut(s) 296, 673, 730
NlaIV GGNNCC 2 cut(s) 154, 188
PagI TCATGA 1 cut(s) 726
PasI CCCWGGG 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 416
PpuMI RGGWCCY 2 cut(s) 153, 439
Psp5II RGGWCCY 2 cut(s) 153, 439
Psp6I CCWGG 2 cut(s) 148, 583
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 148, 583
PspN4I GGNNCC 2 cut(s) 154, 188
PspPI GGNCC 2 cut(s) 153, 439
PspPPI RGGWCCY 2 cut(s) 153, 439
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 4 cut(s) 47, 188, 423, 545
RsaNI GTAC 4 cut(s) 46, 187, 422, 544
SaqAI TTAA 6 cut(s) 158, 315, 363, 629, 675, 760
Sau3AI GATC 3 cut(s) 386, 469, 663
Sau96I GGNCC 2 cut(s) 153, 439
ScrFI CCNGG 2 cut(s) 150, 585
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 2 cut(s) 136, 250
SinI GGWCC 2 cut(s) 153, 439
SmlI CTYRAG 3 cut(s) 157, 362, 569
SmoI CTYRAG 3 cut(s) 157, 362, 569
Sse9I AATT 3 cut(s) 317, 392, 425
SspI AATATT 1 cut(s) 313
SspMI CTAG 3 cut(s) 107, 119, 458
StyD4I CCNGG 2 cut(s) 148, 583
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 418
TaqI TCGA 1 cut(s) 472
TasI AATT 3 cut(s) 317, 392, 425
TatI WGTACW 1 cut(s) 421
Tru1I TTAA 6 cut(s) 158, 315, 363, 629, 675, 760
Tru9I TTAA 6 cut(s) 158, 315, 363, 629, 675, 760
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 67
Vha464I CTTAAG 2 cut(s) 157, 362
VpaK11BI GGWCC 2 cut(s) 153, 439
XagI CCTNNNNNAGG 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmaJI CCTAGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 412
XspI CTAG 3 cut(s) 107, 119, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.