Rh1CG416700
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
67783648 .. 67784019
372 bp
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UTR
Exon/CDS
Intron
Rh1CG416700.1

Sequence Viewer

Length: 267 bp
ATGAATATTAAATTGGAAAAGTTGCTTTACTTGCTGTGCAAAACTCTGTCTCTCCTTAAGCATATTCAACAGGAGCAGAGATCTGAATTAGAAGCAGAAAGCTGTATACGTGGTGCACAATTGACAGAAGAGGACCTCACGAGGTCTATACTAGAGGATGATGATCGAGTGTACTGGTACACCTCAATTCTCCCTAATGATCATAATTCAATCACTAGTTGTATGTGTGTGTGTGTATATATATTGACTTTGTATGTTGATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.31

Weight (kDa)

4.85

Isoelectric Point (pI)

58.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 106
AfaI GTAC 2 cut(s) 173, 179
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 68, 210
AhlI ACTAGT 1 cut(s) 215
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 118
BauI CACGAG 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 118
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 54
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 152, 216
BfrI CTTAAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 162
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 162
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 3 cut(s) 80, 163, 199
BspTI CTTAAG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 179
BssMI GATC 3 cut(s) 80, 163, 199
BssNAI GTATAC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 110
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 3 cut(s) 83, 166, 202
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 80, 163, 199
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BstZ17I GTATAC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 172, 178
CviJI RGCY 1 cut(s) 102
CviKI_1 RGCY 1 cut(s) 102
CviQI GTAC 2 cut(s) 172, 178
DpnI GATC 3 cut(s) 82, 165, 201
DpnII GATC 3 cut(s) 80, 163, 199
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 133
FaiI YATR 9 cut(s) 63, 107, 149, 204, 224, 238, 240, 242, 255
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 106
FokI GGATG 1 cut(s) 170
FspBI CTAG 2 cut(s) 152, 216
Hpy166II GTNNAC 4 cut(s) 107, 116, 172, 180
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 4 cut(s) 107, 116, 172, 180
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 39, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 80, 163, 199
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 56, 160
MaeI CTAG 2 cut(s) 152, 216
MaeII ACGT 1 cut(s) 109
MalI GATC 3 cut(s) 82, 165, 201
MboI GATC 3 cut(s) 80, 163, 199
MboII GAAGA 1 cut(s) 140
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 5 cut(s) 11, 86, 119, 186, 205
MnlI CCTC 5 cut(s) 124, 135, 146, 148, 193
MseI TTAA 2 cut(s) 9, 57
MspCI CTTAAG 1 cut(s) 56
MunI CAATTG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 3 cut(s) 80, 163, 199
Ppu21I YACGTR 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 173, 179
RsaNI GTAC 2 cut(s) 172, 178
SaqAI TTAA 2 cut(s) 9, 57
Sau3AI GATC 3 cut(s) 80, 163, 199
Sau96I GGNCC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 118
SetI ASST 5 cut(s) 104, 112, 138, 146, 185
SgeI CNNG 9 cut(s) 43, 83, 122, 151, 153, 164, 179, 187, 228
SinI GGWCC 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 5 cut(s) 11, 86, 119, 186, 205
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 152, 216
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 166
TasI AATT 5 cut(s) 11, 86, 119, 186, 205
TatI WGTACW 1 cut(s) 171
Tru1I TTAA 2 cut(s) 9, 57
Tru9I TTAA 2 cut(s) 9, 57
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 56
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 2 cut(s) 152, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.