Rh2CG116900
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001331
Physical Location & Seq
Forward (+)
10276468 .. 10279103
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG116900.1

Sequence Viewer

Length: 918 bp
ATGGCAAATCGGAAAGAGATGAGTTCCAGTGAGTTTGTGGAGAGAGATTGGGTCACTGATGAAGGCAATCCCAATCTTCAATTTTTCGCTACCCATTTTGGAAGATCCAAAGTCCAGCCCCACCTCACTGGCAAAAGGTTAAGCAAAGAGAAGAAGTTTCTTCTTGGGTGTTCTTGTTATCAACAGGAGGAATCGAGTTTCCCTACAGCGCAATTAAAGAAATCTGCAGATACTGAGAAAAAATTACAGAAGAGGCCTAGATGGAGACCCAGGAAGATCAACAACCAACCAATGAATCACGGTGAATTCCGTACTCAGCAATTAAAGAACTCAGAAGATACTGAGAAAAAATTTCATAAGAGGCTTAGAGTCTGTAAGAGACCTAGAGGGAGACCCAGGAAGTTTAGCAACCTACAGGCGCATCCTAGGGACCTTAAGCGGGGAATATCTACTGATACATTGGAGAGAAAGGAAAGTTTGTGGTGCCACCAGTGCTTACGGAATGACAGAAATGGTGTCGTCATTTGTTTAAATTGCAGAAAGAAACGCTATTGCTATGACTGCCTTGCAAAGTGGTACCCCGAGAAGACAAAAGAGGACATAGAGATTGCTTGTCCTTATTGTCGTGGGAACTGCAACTGCAGAATATGCCTCAAGGAGGATTTAGTTGTGATGAAATATGATGCTGACCCAGTGGCAAAGGCAGCTGCTGCAACTGTCTTGGGCATCCAAGTTGGGTGTGGATTGCATTTAGGAGATGAATCTAGAGCTAATTTGTTGCACAAGATAATGAACCTGTCCATCAAAATCCTCAAGCGTATGCTGCACAAGATGACATTTTTTGGACAATTTAAGTGTGCAGCAACATTGTCTTCGCACTCTGAGATCCCTGCACTTTATTTTGAGGCCATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

305

Amino Acids

35.46

Weight (kDa)

9.63

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 157 - 221 2.5e-08 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 2 cut(s) 483, 576
AciI CCGC 1 cut(s) 439
AclWI GGATC 2 cut(s) 99, 880
AcsI RAATTY 2 cut(s) 305, 350
AfaI GTAC 2 cut(s) 313, 578
AfiI CCNNNNNNNGG 2 cut(s) 439, 658
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 269, 395
AluBI AGCT 2 cut(s) 707, 770
AluI AGCT 2 cut(s) 707, 770
Alw26I GTCTC 3 cut(s) 259, 373, 385
AlwI GGATC 2 cut(s) 99, 880
AlwNI CAGNNNCTG 2 cut(s) 233, 710
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 2 cut(s) 254, 906
ApeKI GCWGC 5 cut(s) 704, 707, 710, 823, 860
ApoI RAATTY 2 cut(s) 305, 350
Asp718I GGTACC 1 cut(s) 576
AspA2I CCTAGG 1 cut(s) 425
AspLEI GCGC 2 cut(s) 211, 421
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 581
AvaII GGWCC 1 cut(s) 430
AvrII CCTAGG 1 cut(s) 425
BanI GGYRCC 2 cut(s) 483, 576
BbsI GAAGAC 2 cut(s) 593, 864
BbvI GCAGC 5 cut(s) 694, 697, 716, 810, 872
BccI CCATC 3 cut(s) 255, 809, 917
BciT130I CCWGG 2 cut(s) 271, 397
BcoDI GTCTC 3 cut(s) 259, 373, 385
BfaI CTAG 4 cut(s) 258, 384, 426, 765
BfmI CTRYAG 4 cut(s) 204, 225, 413, 640
BfrI CTTAAG 1 cut(s) 434
BisI GCNGC 5 cut(s) 705, 708, 711, 824, 861
BlnI CCTAGG 1 cut(s) 425
BlsI GCNGC 5 cut(s) 706, 709, 712, 825, 862
Bme1390I CCNGG 2 cut(s) 271, 397
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 431, 485, 578
BmrFI CCNGG 2 cut(s) 271, 397
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 3 cut(s) 430, 673, 735
BmuI ACTGGG 1 cut(s) 686
BpiI GAAGAC 2 cut(s) 593, 864
BpuEI CTTGAG 2 cut(s) 638, 797
BsaI GGTCTC 3 cut(s) 259, 373, 385
BsaJI CCNNGG 3 cut(s) 269, 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 658
Bse1I ACTGG 4 cut(s) 27, 133, 490, 692
BseBI CCWGG 2 cut(s) 271, 397
BseDI CCNNGG 3 cut(s) 269, 395, 425
BseGI GGATG 2 cut(s) 421, 726
BseLI CCNNNNNNNGG 2 cut(s) 439, 658
BseMII CTCAG 5 cut(s) 225, 329, 333, 345, 873
BseNI ACTGG 4 cut(s) 27, 133, 490, 692
BseXI GCAGC 5 cut(s) 694, 697, 716, 810, 872
BsgI GTGCAG 3 cut(s) 809, 876, 879
BshFI GGCC 2 cut(s) 256, 908
BshNI GGYRCC 2 cut(s) 483, 576
BsiHKCI CYCGRG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 439, 658
BsmAI GTCTC 3 cut(s) 259, 373, 385
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 2 cut(s) 256, 908
Bso31I GGTCTC 3 cut(s) 259, 373, 385
BsoBI CYCGRG 1 cut(s) 581
Bsp143I GATC 3 cut(s) 104, 276, 885
BspACI CCGC 1 cut(s) 439
BspANI GGCC 2 cut(s) 256, 908
BspCNI CTCAG 5 cut(s) 226, 328, 334, 344, 874
BspLI GGNNCC 3 cut(s) 431, 485, 578
BspMAI CTGCAG 2 cut(s) 229, 644
BspPI GGATC 2 cut(s) 99, 880
BspT107I GGYRCC 2 cut(s) 483, 576
BspTI CTTAAG 1 cut(s) 434
BspTNI GGTCTC 3 cut(s) 259, 373, 385
BsrI ACTGG 4 cut(s) 27, 133, 490, 692
BssECI CCNNGG 3 cut(s) 269, 395, 425
BssMI GATC 3 cut(s) 104, 276, 885
BssT1I CCWWGG 1 cut(s) 425
Bst2UI CCWGG 2 cut(s) 271, 397
Bst4CI ACNGT 2 cut(s) 302, 718
Bst6I CTCTTC 1 cut(s) 245
BstAFI CTTAAG 1 cut(s) 434
BstAPI GCANNNNNTGC 2 cut(s) 648, 710
BstDEI CTNAG 6 cut(s) 234, 315, 331, 342, 365, 882
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 421, 726
BstHHI GCGC 2 cut(s) 211, 421
BstKTI GATC 3 cut(s) 107, 279, 888
BstMAI GTCTC 3 cut(s) 259, 373, 385
BstMBI GATC 3 cut(s) 104, 276, 885
BstMWI GCNNNNNNNGC 6 cut(s) 492, 561, 648, 704, 710, 823
BstNI CCWGG 2 cut(s) 271, 397
BstSCI CCNGG 2 cut(s) 269, 395
BstSFI CTRYAG 4 cut(s) 204, 225, 413, 640
BstV1I GCAGC 5 cut(s) 694, 697, 716, 810, 872
BstV2I GAAGAC 2 cut(s) 593, 864
BstX2I RGATCY 2 cut(s) 104, 885
BstXI CCANNNNNNTGG 1 cut(s) 128
BstYI RGATCY 2 cut(s) 104, 885
BsuRI GGCC 2 cut(s) 256, 908
BtsCI GGATG 2 cut(s) 421, 726
BtsIMutI CAGTG 5 cut(s) 34, 54, 126, 497, 699
CaiI CAGNNNCTG 2 cut(s) 233, 710
CfoI GCGC 2 cut(s) 211, 421
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 312, 577
CviJI RGCY 6 cut(s) 118, 256, 364, 707, 770, 908
CviKI_1 RGCY 6 cut(s) 118, 256, 364, 707, 770, 908
CviQI GTAC 2 cut(s) 312, 577
DdeI CTNAG 6 cut(s) 234, 315, 331, 342, 365, 882
DpnI GATC 3 cut(s) 106, 278, 887
DpnII GATC 3 cut(s) 104, 276, 885
DraI TTTAAA 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 425
Eco147I AGGCCT 1 cut(s) 256
Eco31I GGTCTC 3 cut(s) 259, 373, 385
Eco47I GGWCC 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 581
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 269, 395
EcoT14I CCWWGG 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 425
FaiI YATR 6 cut(s) 357, 558, 602, 649, 681, 821
FaqI GGGAC 1 cut(s) 443
FauI CCCGC 1 cut(s) 432
Fnu4HI GCNGC 5 cut(s) 705, 708, 711, 824, 861
FokI GGATG 2 cut(s) 408, 713
Fsp4HI GCNGC 5 cut(s) 705, 708, 711, 824, 861
FspBI CTAG 4 cut(s) 258, 384, 426, 765
GlaI GCGC 2 cut(s) 210, 420
GluI GCNGC 5 cut(s) 705, 708, 711, 824, 861
HaeIII GGCC 2 cut(s) 256, 908
HhaI GCGC 2 cut(s) 211, 421
Hin6I GCGC 2 cut(s) 209, 419
HinP1I GCGC 2 cut(s) 209, 419
HinfI GANTC 4 cut(s) 191, 295, 369, 761
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 12, 334, 883
Hpy188III TCNNGA 1 cut(s) 765
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 302, 718
HpyF10VI GCNNNNNNNGC 6 cut(s) 492, 561, 648, 704, 710, 823
HpyF3I CTNAG 6 cut(s) 234, 315, 331, 342, 365, 882
HspAI GCGC 2 cut(s) 209, 419
KpnI GGTACC 1 cut(s) 580
Kzo9I GATC 3 cut(s) 104, 276, 885
Lsp1109I GCAGC 5 cut(s) 694, 697, 716, 810, 872
LweI GCATC 3 cut(s) 430, 673, 735
MaeI CTAG 4 cut(s) 258, 384, 426, 765
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 106, 278, 887
MboI GATC 3 cut(s) 104, 276, 885
MboII GAAGA 9 cut(s) 68, 114, 152, 163, 262, 286, 347, 598, 864
MflI RGATCY 2 cut(s) 104, 885
MluCI AATT 9 cut(s) 80, 212, 242, 305, 320, 350, 532, 772, 848
MlyI GAGTC 1 cut(s) 378
MseI TTAA 6 cut(s) 140, 215, 323, 435, 530, 852
MspA1I CMGCKG 1 cut(s) 707
MspCI CTTAAG 1 cut(s) 434
MspR9I CCNGG 2 cut(s) 271, 397
MvaI CCWGG 2 cut(s) 271, 397
MwoI GCNNNNNNNGC 6 cut(s) 492, 561, 648, 704, 710, 823
NdeII GATC 3 cut(s) 104, 276, 885
NlaIV GGNNCC 3 cut(s) 431, 485, 578
NmuCI GTSAC 1 cut(s) 52
PceI AGGCCT 1 cut(s) 256
PfeI GAWTC 3 cut(s) 191, 295, 761
PkrI GCNGC 5 cut(s) 706, 709, 712, 825, 862
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 269, 395
PspGI CCWGG 2 cut(s) 269, 395
PspN4I GGNNCC 3 cut(s) 431, 485, 578
PspPI GGNCC 1 cut(s) 430
PspPPI RGGWCCY 1 cut(s) 430
PstI CTGCAG 2 cut(s) 229, 644
PstNI CAGNNNCTG 2 cut(s) 233, 710
PsuI RGATCY 2 cut(s) 104, 885
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 2 cut(s) 313, 578
RsaNI GTAC 2 cut(s) 312, 577
SaqAI TTAA 6 cut(s) 140, 215, 323, 435, 530, 852
SatI GCNGC 5 cut(s) 705, 708, 711, 824, 861
Sau3AI GATC 3 cut(s) 104, 276, 885
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 2 cut(s) 271, 397
SetI ASST 8 cut(s) 126, 140, 385, 414, 435, 709, 772, 798
SfaNI GCATC 3 cut(s) 430, 673, 735
SfcI CTRYAG 4 cut(s) 204, 225, 413, 640
SinI GGWCC 1 cut(s) 430
SmlI CTYRAG 3 cut(s) 434, 653, 812
SmoI CTYRAG 3 cut(s) 434, 653, 812
Sse9I AATT 9 cut(s) 80, 212, 242, 305, 320, 350, 532, 772, 848
SseBI AGGCCT 1 cut(s) 256
SsiI CCGC 1 cut(s) 439
SspMI CTAG 4 cut(s) 258, 384, 426, 765
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 269, 395
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 302, 718
TaqI TCGA 1 cut(s) 194
TasI AATT 9 cut(s) 80, 212, 242, 305, 320, 350, 532, 772, 848
TfiI GAWTC 3 cut(s) 191, 295, 761
Tru1I TTAA 6 cut(s) 140, 215, 323, 435, 530, 852
Tru9I TTAA 6 cut(s) 140, 215, 323, 435, 530, 852
TscAI CASTG 5 cut(s) 34, 61, 133, 497, 699
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 5 cut(s) 704, 707, 710, 823, 860
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 6 cut(s) 75, 308, 344, 689, 774, 806
TspGWI ACGGA 2 cut(s) 299, 514
TspRI CASTG 5 cut(s) 34, 61, 133, 497, 699
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 430
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 2 cut(s) 305, 350
XbaI TCTAGA 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 2 cut(s) 34, 737
XmaJI CCTAGG 1 cut(s) 425
XspI CTAG 4 cut(s) 258, 384, 426, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.