Rh1CG416900
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001331
Physical Location & Seq
Forward (+)
67786228 .. 67787616
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG416900.1

Sequence Viewer

Length: 276 bp
ATGGAGAGTTCAGATTCAATTAGAAGTAGTCAAAGTGATTATAAATCAGACGTTGCATATGGAGGCGCCGTTTGGGACATTTTCCGTCGGCAAGATGTACCCAAGTTAACAGAATACCTGTTAAAGCATCAGAAAGAATTTCGCCACATTAGTAATCTTCCTGTGAAATCTGTGAAGAAGATGGCACTGTATGCAGCAAGTGATGCTATAAGTGAAGCTGAAACTCTGAAGTCAAGAATCAGTTCATTAAATGAGACGGCAAAGCTGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

91

Amino Acids

10.31

Weight (kDa)

9.22

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 2 cut(s) 218, 265
AluI AGCT 2 cut(s) 218, 265
Alw26I GTCTC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 175
BceAI ACGGC 2 cut(s) 53, 273
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 270
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 2 cut(s) 136, 193
BsaHI GRCGYC 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
BseXI GCAGC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 65
BssMI GATC 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 2 cut(s) 191, 203
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 191, 203
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 2 cut(s) 218, 265
CviKI_1 RGCY 2 cut(s) 218, 265
CviQI GTAC 1 cut(s) 98
DinI GGCGCC 1 cut(s) 67
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 248
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 248
FaiI YATR 5 cut(s) 42, 58, 60, 192, 209
FaqI GGGAC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 274
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 69
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 2 cut(s) 14, 237
HpaI GTTAAC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 4 cut(s) 13, 49, 132, 228
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 56, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 203
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 66
KasI GGCGCC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 2 cut(s) 131, 174
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 136, 193
MaeI CTAG 1 cut(s) 274
MaeII ACGT 1 cut(s) 51
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 3 cut(s) 149, 187, 190
MflI RGATCY 1 cut(s) 270
MluCI AATT 2 cut(s) 18, 137
Mly113I GGCGCC 1 cut(s) 66
MnlI CCTC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 3 cut(s) 107, 122, 248
MwoI GCNNNNNNNGC 2 cut(s) 191, 203
NarI GGCGCC 1 cut(s) 66
NdeI CATATG 1 cut(s) 58
NdeII GATC 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 14, 237
PkrI GCNGC 1 cut(s) 196
PluTI GGCGCC 1 cut(s) 69
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 3 cut(s) 107, 122, 248
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 270
SetI ASST 4 cut(s) 54, 120, 220, 267
SfaNI GCATC 2 cut(s) 136, 193
SfoI GGCGCC 1 cut(s) 67
SgeI CNNG 6 cut(s) 104, 115, 130, 173, 210, 246
Sse9I AATT 2 cut(s) 18, 137
SspDI GGCGCC 1 cut(s) 65
SspMI CTAG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 18, 137
TfiI GAWTC 2 cut(s) 14, 237
Tru1I TTAA 3 cut(s) 107, 122, 248
Tru9I TTAA 3 cut(s) 107, 122, 248
TscAI CASTG 1 cut(s) 192
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.