Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001331

Physical Location & Seq

Genomic Coordinates Reverse (-)

46346369 .. 46349006

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAAATGGGAAAGAGATGAGTTCCAATGAGTTTGTGGAGAGGTACTTGGAGAATAACCAGCTTGTGATGCTCACAGGTCTCATGGATGATTGGATGGCTTGCAGAGATTGGGTCACTGATGAAGGCAATCCCAATCTTCAATTTTCCGCTACCCATTTTGGAAGATCCAAAGTCCAGGATGGGTCTGATGTAGTTTTCAGGGAAACTAAAGGTAAATGGCAGGCAGTTGTAGTAGAGATTTCTAGAATGCACAAAATAGGTCACCCTGTACTTAAGTTGGCACAACTAGTGTTGAGCAGAGTGACTCATTGTCTGAGCAGTTGCAAGAAGTTGGCATTCCCCATGAGTTGTCTAGGGGCAGTTACCATTGCAACCAATATGGCAGGTCGAGGAACATACATAATCTTTGGTAGGAATGCAGAATTTATGGCGAGGTTGAAGCTGCGTGAGATGCTTGTGCTAAGAGTTGTAAAACTAACTGAAGCAGGTTATGTCTCAGTGAAAAAACTTCCGCCGAAAAAGTCCTGGAAGTTGTGCTCTGTCTTTGATCTTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

188

Amino Acids

21.12

Weight (kDa)

9.38

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	119 - 152	6e-07	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990 AT4G00990
fragaria_vesca	FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570
malus_domestica	MD01G1218500.v1.1
prunus_persica	Prupe.2G309900_v2.0.a1 Prupe.2G309900_v2.0.a1 Prupe.4G196700_v2.0.a1
pyrus_communis	pycom01g22840
rosa_chinensis	RchiOBHm_Chr1g0380571 RchiOBHm_Chr2g0102041
rosa_laevigata	RLG00000001517 RLG00000003267 RLG00000004936 RLG00000008941 RLG00000021775 RLG00000023713 RLG00000026284 RLG00000035166
rosa_multiflora	Rmu_co8145792.1_g000001 Rmu_co8424905.1_g000001 Rmu_co8458399.1_g000001 Rmu_sc0002486.1_g000005 Rmu_sc0003730.1_g000009 Rmu_sc0011739.1_g000001 Rmu_ssc0000015.1_g000010
rosa_roxburghii	Rroxscaffold_2G00097880 Rroxscaffold_4G00279180 Rroxscaffold_4G00279190 Rroxscaffold_6G00388540
rosa_rugosa	Rorug01G0422600
rosa_samantha	Rh1AG447100 Rh1BG202200 Rh1BG402400 Rh1CG416600 Rh1CG416700 Rh1CG416800 Rh1CG416900 Rh1DG432600 Rh2CG116900 Rh2CG157700 Rh2CG157800 Rh2CG241900 Rh4BG088800 Rh4BG088900 Rh5BG519200 Rh5CG542800 Rh5DG400800
rosa_wichuraiana	Rw1G038890 Rw5G046210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	377, 479
AciI	CCGC	2 cut(s)	150, 515
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	47, 273
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	143, 442
AhdI	GACNNNNNGTC	1 cut(s)	312
AhlI	ACTAGT	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	177, 527
AluBI	AGCT	2 cut(s)	64, 445
AluI	AGCT	2 cut(s)	64, 445
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	86, 502
AlwI	GGATC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	91, 176
BciT130I	CCWGG	2 cut(s)	179, 529
BcoDI	GTCTC	2 cut(s)	86, 502
BcuI	ACTAGT	1 cut(s)	289
BfaI	CTAG	3 cut(s)	246, 290, 356
BfrI	CTTAAG	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	377, 479
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	2 cut(s)	179, 529
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	179, 529
BmsI	GCATC	2 cut(s)	60, 444
BsaI	GGTCTC	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	179, 529
BseGI	GGATG	3 cut(s)	94, 102, 187
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	308, 513
BseXI	GCAGC	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	86, 502
BsmI	GAATGC	3 cut(s)	255, 338, 424
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	2 cut(s)	167, 550
BspACI	CCGC	2 cut(s)	150, 515
BspCNI	CTCAG	2 cut(s)	309, 512
BspMI	ACCTGC	2 cut(s)	377, 479
BspPI	GGATC	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	369
BssMI	GATC	2 cut(s)	167, 550
Bst2UI	CCWGG	2 cut(s)	179, 529
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	103, 225
BstDEI	CTNAG	3 cut(s)	317, 464, 499
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	3 cut(s)	94, 102, 187
BstKTI	GATC	2 cut(s)	170, 553
BstMAI	GTCTC	2 cut(s)	86, 502
BstMBI	GATC	2 cut(s)	167, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 454
BstNI	CCWGG	2 cut(s)	179, 529
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	177, 527
BstV1I	GCAGC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	94, 102, 187
BtsIMutI	CAGTG	2 cut(s)	117, 507
BveI	ACCTGC	2 cut(s)	377, 479
Cac8I	GCNNGC	2 cut(s)	103, 225
Csp6I	GTAC	2 cut(s)	46, 272
CviAII	CATG	2 cut(s)	85, 346
CviJI	RGCY	3 cut(s)	64, 101, 445
CviKI_1	RGCY	3 cut(s)	64, 101, 445
CviQI	GTAC	2 cut(s)	46, 272
DdeI	CTNAG	3 cut(s)	317, 464, 499
DpnI	GATC	2 cut(s)	169, 552
DpnII	GATC	2 cut(s)	167, 550
DriI	GACNNNNNGTC	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	177, 527
FaeI	CATG	2 cut(s)	88, 349
FaiI	YATR	8 cut(s)	86, 347, 383, 400, 404, 431, 495, 560
FatI	CATG	2 cut(s)	84, 345
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	3 cut(s)	101, 109, 194
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	3 cut(s)	246, 290, 356
GluI	GCNGC	1 cut(s)	446
Hin1II	CATG	2 cut(s)	88, 349
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	190, 318
Hpy188III	TCNNGA	2 cut(s)	246, 554
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	105, 253, 327, 374, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 454
HpyF3I	CTNAG	3 cut(s)	317, 464, 499
Hsp92II	CATG	2 cut(s)	88, 349
Kzo9I	GATC	2 cut(s)	167, 550
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	2 cut(s)	60, 444
MaeI	CTAG	3 cut(s)	246, 290, 356
MaeIII	GTNAC	4 cut(s)	115, 263, 304, 364
MalI	GATC	2 cut(s)	169, 552
MboI	GATC	2 cut(s)	167, 550
MboII	GAAGA	2 cut(s)	131, 177
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	2 cut(s)	143, 425
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	3 cut(s)	36, 386, 429
MseI	TTAA	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	179, 529
Mva1269I	GAATGC	3 cut(s)	255, 338, 424
MvaI	CCWGG	2 cut(s)	179, 529
MwoI	GCNNNNNNNGC	2 cut(s)	70, 454
NdeII	GATC	2 cut(s)	167, 550
NlaIII	CATG	2 cut(s)	88, 349
NmuCI	GTSAC	3 cut(s)	115, 263, 304
PctI	GAATGC	3 cut(s)	255, 338, 424
PfoI	TCCNGGA	2 cut(s)	177, 527
PkrI	GCNGC	1 cut(s)	447
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	177, 527
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	2 cut(s)	177, 527
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	47, 273
RsaNI	GTAC	2 cut(s)	46, 272
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	2 cut(s)	167, 550
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	179, 529
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	9 cut(s)	47, 66, 82, 217, 265, 391, 440, 447, 493
SfaNI	GCATC	2 cut(s)	60, 444
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	289
Sse9I	AATT	2 cut(s)	143, 425
SsiI	CCGC	2 cut(s)	150, 515
SspMI	CTAG	3 cut(s)	246, 290, 356
StyD4I	CCNGG	2 cut(s)	177, 527
TaqI	TCGA	1 cut(s)	391
TasI	AATT	2 cut(s)	143, 425
TatI	WGTACW	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	124, 507
TseFI	GTSAC	3 cut(s)	115, 263, 304
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	3 cut(s)	115, 263, 304
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	124, 507
Vha464I	CTTAAG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	3 cut(s)	246, 290, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.