Rroxscaffold_2G00097880
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001331
Physical Location & Seq
Reverse (-)
19077223 .. 19081051
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097880.1

Sequence Viewer

Length: 381 bp
ATGAAGGATGGAGAAACTCATCTTCGCTCATCAAGGACAATTAGAAGCTTCCCAATCCCAACCGGTAAATGGTCTGATACTTGGTCAGGAAAAAAGAGAACACGAGAAGAGGCCTTCCCTTCAAAGGATAAAGCTGATACTTTTACTTTGCAGGGTAAGTCTAACAAAATCAAGGGGAGCTTGATGTGTCACCAGTGTCAGCGGAACGATAAGAGTGGTGTTGTACACTGCTCTCTGTGTAAATCAAAGCGGTTTTGCTATGAGTGCATTGAAAGATGGTACCCTGGGAAATCAAGAGAGGAATTTGAGGATGCTTGCCCATTTTGCCGTGGCAATTGCAACTGCAAAGCGTGGCTGCGCGAGTTTTTCGTTACGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC WRC zf-4CXXC_R1

Protein Analysis

126

Amino Acids

14.7

Weight (kDa)

9.35

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 61 - 118 6.4e-06 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 279
AccII CGCG 1 cut(s) 360
AciI CCGC 2 cut(s) 202, 250
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 2 cut(s) 225, 281
AfiI CCNNNNNNNGG 2 cut(s) 69, 124
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 123, 272
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 48, 134, 180
AluI AGCT 3 cut(s) 48, 134, 180
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 279
BauI CACGAG 1 cut(s) 102
BbvI GCAGC 1 cut(s) 342
BccI CCATC 2 cut(s) 2, 270
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 285
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 283, 284, 328
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 124
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 283, 284, 328
BseGI GGATG 2 cut(s) 13, 316
BseLI CCNNNNNNNGG 2 cut(s) 69, 124
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 279
BshTI ACCGGT 1 cut(s) 62
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 69, 124
BsnI GGCC 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 223
BspACI CCGC 2 cut(s) 202, 250
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 283, 284, 328
BssSI CACGAG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 13, 316
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 264, 324
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 13, 316
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 200, 226
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 62
Csp6I GTAC 2 cut(s) 224, 280
CspAI ACCGGT 1 cut(s) 62
CviJI RGCY 5 cut(s) 48, 113, 134, 180, 355
CviKI_1 RGCY 5 cut(s) 48, 113, 134, 180, 355
CviQI GTAC 2 cut(s) 224, 280
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 283
FaiI YATR 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 164, 196
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 2 cut(s) 20, 323
Fsp4HI GCNGC 1 cut(s) 356
GlaI GCGC 1 cut(s) 359
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 360
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 46
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 87, 294
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 124, 129
HpyCH4V TGCA 4 cut(s) 151, 267, 339, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 324
HspAI GCGC 1 cut(s) 358
KpnI GGTACC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 6 cut(s) 72, 76, 137, 206, 270, 297
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 188, 370
MboII GAAGA 2 cut(s) 14, 119
MfeI CAATTG 1 cut(s) 334
MluCI AATT 3 cut(s) 39, 302, 334
MnlI CCTC 3 cut(s) 103, 292, 301
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 264, 324
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 188
PasI CCCWGGG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 281
RsaI GTAC 2 cut(s) 225, 281
RsaNI GTAC 2 cut(s) 224, 280
SatI GCNGC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 285
SetI ASST 3 cut(s) 50, 136, 182
SfaNI GCATC 1 cut(s) 301
Sse9I AATT 3 cut(s) 39, 302, 334
SseBI AGGCCT 1 cut(s) 113
SsiI CCGC 2 cut(s) 202, 250
StuI AGGCCT 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 283
TasI AATT 3 cut(s) 39, 302, 334
TatI WGTACW 1 cut(s) 223
TscAI CASTG 2 cut(s) 200, 233
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 200, 233
XapI RAATTY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.