Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001331

Physical Location & Seq

Genomic Coordinates Reverse (-)

62126066 .. 62131955

Gene Structure 5890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAAATGGGAAAGAGATGAGTTCCAGTGAATTTGTGGAAAGGTACTTGGAGAATAACCAGCCTGTGGTTCTCATAGGCCTCATGGATGATTGGAGGGCTTGTAGAGATTGGATCACTGATGAAGGCAATCCCAATCTTCAATTTTCCGCTACCCATTTTGGAAGATCCAAAGTCCAGGATGGGTCTGATGTAGTTTTCAGGGAAACTAAAGGGGCAGTTACTATTGCAACCAATATAGCAGGTCGAGGAACATACATAATCTTTGGTGGGAATGTAGAATTTATGGTGAGGTTGAACCTGCGTGAGATGCTTGTGCCAAGAGTTGTAAAACTAACTGAAGGAGATTATGTCTCAGTGAAAAAACTTCCGCCTAAAAAGTCCTGGAAGGTTAATGAAAAGCTATTTCCATGCAAACTGACCAATGAAAAGACCATGTTAGCTGAGGAAGCTGTGAATTTAGCTGTTGAAACTTGGAGTCAGAGATCATTGACGGAGCTTGAAGCTAGCAGAGGAGCGTCTTTCTTATTCTTGCGAAAAGGTGAAACTTTGAAACTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

188

Amino Acids

21.12

Weight (kDa)

8.51

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	70 - 105	5.4e-08	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00990 AT4G00990
fragaria_vesca	FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570 FvH4_7g31570
malus_domestica	MD01G1218500.v1.1
prunus_persica	Prupe.2G309900_v2.0.a1 Prupe.2G309900_v2.0.a1 Prupe.4G196700_v2.0.a1
pyrus_communis	pycom01g22840
rosa_chinensis	RchiOBHm_Chr1g0380571 RchiOBHm_Chr2g0102041
rosa_laevigata	RLG00000001517 RLG00000003267 RLG00000004936 RLG00000008941 RLG00000021775 RLG00000023713 RLG00000026284 RLG00000035166
rosa_multiflora	Rmu_co8145792.1_g000001 Rmu_co8424905.1_g000001 Rmu_co8458399.1_g000001 Rmu_sc0002486.1_g000005 Rmu_sc0003730.1_g000009 Rmu_sc0011739.1_g000001 Rmu_ssc0000015.1_g000010
rosa_roxburghii	Rroxscaffold_2G00097880 Rroxscaffold_4G00279180 Rroxscaffold_4G00279190 Rroxscaffold_6G00388540
rosa_rugosa	Rorug01G0422600
rosa_samantha	Rh1AG447100 Rh1BG202200 Rh1BG402400 Rh1CG416600 Rh1CG416700 Rh1CG416800 Rh1CG416900 Rh1DG432600 Rh2CG116900 Rh2CG157700 Rh2CG157800 Rh2CG241900 Rh4BG088800 Rh4BG088900 Rh5BG519200 Rh5CG542800 Rh5DG400800
rosa_wichuraiana	Rw1G038890 Rw5G046210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	233, 309
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	2 cut(s)	150, 371
AclWI	GGATC	2 cut(s)	122, 162
AcsI	RAATTY	3 cut(s)	32, 281, 457
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	5 cut(s)	143, 298, 470, 503, 553
AjnI	CCWGG	2 cut(s)	177, 383
AluBI	AGCT	6 cut(s)	403, 443, 452, 464, 499, 506
AluI	AGCT	6 cut(s)	403, 443, 452, 464, 499, 506
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	122, 162
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	3 cut(s)	32, 281, 457
AsuHPI	GGTGA	2 cut(s)	301, 554
AsuNHI	GCTAGC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	179, 385
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	507
BfuAI	ACCTGC	2 cut(s)	233, 309
Bme1390I	CCNGG	2 cut(s)	179, 385
BmrFI	CCNGG	2 cut(s)	179, 385
BmsI	GCATC	1 cut(s)	300
BmtI	GCTAGC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	444
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	179, 385
BseGI	GGATG	2 cut(s)	94, 187
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	369, 435
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	114, 167, 485
BspACI	CCGC	2 cut(s)	150, 371
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	368, 436
BspMI	ACCTGC	2 cut(s)	233, 309
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	122, 162
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	114, 167, 485
Bst2UI	CCWGG	2 cut(s)	179, 385
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	355, 444
BstF5I	GGATG	2 cut(s)	94, 187
BstKTI	GATC	3 cut(s)	117, 170, 488
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	114, 167, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	310, 449
BstNI	CCWGG	2 cut(s)	179, 385
BstSCI	CCNGG	2 cut(s)	177, 383
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	94, 187
BtsIMutI	CAGTG	3 cut(s)	34, 117, 363
BveI	ACCTGC	2 cut(s)	233, 309
Cac8I	GCNNGC	1 cut(s)	508
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	85, 411, 436
CviJI	RGCY	9 cut(s)	64, 81, 101, 403, 443, 452, 464, 499, 506
CviKI_1	RGCY	9 cut(s)	64, 81, 101, 403, 443, 452, 464, 499, 506
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	355, 444
DpnI	GATC	3 cut(s)	116, 169, 487
DpnII	GATC	3 cut(s)	114, 167, 485
EciI	GGCGGA	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	177, 383
FaeI	CATG	3 cut(s)	88, 414, 439
FaiI	YATR	9 cut(s)	77, 86, 239, 256, 260, 287, 351, 412, 437
FatI	CATG	3 cut(s)	84, 410, 435
FokI	GGATG	2 cut(s)	101, 194
FspBI	CTAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	88, 414, 439
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	2 cut(s)	301, 554
Hpy188I	TCNGA	3 cut(s)	190, 483, 563
HpyAV	CCTTC	3 cut(s)	119, 335, 382
HpyCH4V	TGCA	2 cut(s)	230, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	310, 449
HpyF3I	CTNAG	2 cut(s)	355, 444
Hsp92II	CATG	3 cut(s)	88, 414, 439
Kzo9I	GATC	3 cut(s)	114, 167, 485
LmnI	GCTCC	2 cut(s)	496, 515
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	116, 169, 487
MboI	GATC	3 cut(s)	114, 167, 485
MboII	GAAGA	2 cut(s)	131, 177
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	4 cut(s)	32, 143, 281, 457
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	6 cut(s)	90, 92, 242, 285, 439, 506
MseI	TTAA	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	179, 385
MvaI	CCWGG	2 cut(s)	179, 385
MwoI	GCNNNNNNNGC	2 cut(s)	310, 449
NdeII	GATC	3 cut(s)	114, 167, 485
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	3 cut(s)	88, 414, 439
PceI	AGGCCT	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	2 cut(s)	177, 383
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	177, 383
PspGI	CCWGG	2 cut(s)	177, 383
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	114, 167, 485
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	179, 385
SfaNI	GCATC	1 cut(s)	300
Sse9I	AATT	4 cut(s)	32, 143, 281, 457
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	150, 371
SspMI	CTAG	1 cut(s)	507
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	177, 383
TaqI	TCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	32, 143, 281, 457
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	3 cut(s)	34, 124, 363
TspDTI	ATGAA	3 cut(s)	138, 411, 441
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	3 cut(s)	34, 124, 363
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	3 cut(s)	32, 281, 457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.